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[189024_at] 7TM receptor

Description T06C12.11 /REP_DB=WormBase Gene ID /WP=CE16361 /TR=O18046 /GB=CAB03307.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 11      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2
(-3)
A 		5.1
(-0.3)
A 		3.9
(-1.4)
A 		9
(3)
A 		7
B 4.8
(1.8)
A 		2.8
(-3)
A 		3.5
(-1.3)
A 		5.3
(3)
A 		3
C 4.7
(-2.1)
A 		3.5
(-3)
A 		4.1
(-2.6)
A 		11.7
(3)
A 		8
avr 3.8
(-3) 		3.8
(-3) 		3.8
(-3) 		8.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.7
(3)
A 		2.1
(-3)
A 		5.1
(0.9)
A 		3.9
(-0.7)
A 		3.8
(-0.8)
A 		2.6
(-2.3)
A 		5
B 2.9
(-2.1)
A 		7.1
(3)
A 		5.9
(1.5)
A 		5.3
(0.8)
A 		2.6
(-2.5)
A 		2.2
(-3)
A 		5
C 2.5
(-2.5)
A 		10.6
(3)
A 		2.2
(-2.7)
A 		2.8
(-2.3)
A 		1.7
(-3)
A 		2.4
(-2.5)
A 		9
avr 4
(-0.7) 		6.6
(3) 		4.4
(-0.1) 		4
(-0.7) 		2.7
(-2.6) 		2.4
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(-3)
A 		1.1
(1)
A 		1
(0)
A 		1.3
(3)
A 		1
B 1.5
(3)
A 		0.7
(-3)
A 		0.8
(-2.3)
A 		1.1
(0)
A 		1
C 1.5
(0)
A 		1
(-3)
A 		1.4
(-0.6)
A 		2
(3)
A 		1
avr 1.2
(-0) 		0.9
(-3) 		1.1
(-1) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.2
(3)
A 		0.8
(-1)
A 		1.1
(2)
A 		1
(1)
A 		1.1
(2)
A 		0.6
(-3)
A 		1
B 1
(-2.3)
A 		2.4
(3)
A 		1.4
(-0.8)
A 		1.4
(-0.8)
A 		1.1
(-1.9)
A 		0.8
(-3)
A 		2
C 0.9
(-2.1)
A 		3.2
(3)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		0.8
(-2.3)
A 		3
avr 1
(-1.7) 		2.1
(3) 		1
(-1.7) 		1
(-1.7) 		0.9
(-2.1) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14725
Sequence Type Exemplar sequence
Representative Public ID T06C12.11 NCBI
Target Description T06C12.11 /REP_DB=WormBase Gene ID /WP=CE16361 /TR=O18046 /GB=CAB03307.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074572 NCBI Caenorhabditis elegans T06C12.11 (T06C12.11) mRNA, complete cds. 11/11 None
GENEFINDER00000035473 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15894645:15896994:1 9/11 None
T06C12.11 ENSEMBL cdna:known chromosome:CEL140:V:15895580:15896744:1 gene:T06C12.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035469 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15895579-15896744(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Ensembl T06C12.11
Entrez Gene 188170 Entrez gene
SwissProt O18046 EMBL-EBI
WormBase CE16361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03307 Hypothetical protein T06C12.11 [Caenorhabditis elegans] ref|NP_506973.1| T06C12.11 [Caenorhabditis elegans] 0.0
blast AAB71275 Seven tm receptor protein 134 [Caenorhabditis elegans] ref|NP_503312.1| Seven TM Receptor family member (str-134) [Caenorhabditis elegans] 1.0E-148
blast CAB03307 Hypothetical protein T06C12.11 [Caenorhabditis elegans] ref|NP_506973.1| T06C12.11 [Caenorhabditis elegans] 1.0E-131
blast AAB71275 Seven tm receptor protein 134 [Caenorhabditis elegans] ref|NP_503312.1| Seven TM Receptor family member (str-134) [Caenorhabditis elegans] 1.0E-108
blast F88939 protein C05E4.5 [imported] - Caenorhabditis elegans 1.0E-100
blast AAB65391 Seven tm receptor protein 131 [Caenorhabditis elegans] ref|NP_505084.1| Seven TM Receptor family member (str-131) [Caenorhabditis elegans] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.9E-111
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.5E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506973.1 7 10-29,36-58,85-107,128-150,198-220,240-262,277-299
T06C12.11 7 10-29,36-58,85-107,128-150,198-220,240-262,277-299
GENEFINDER00000035473 7 84-106,126-148,163-185,205-227,250-272,320-342,357-379
Sequence
Target Sequence 
>C. ELEGANS:189024_AT
cttgcattgctatttttgtaccccttcgcaatttctataacatggttctctgtttgctat
tttggcttgaaaataactcctgaaaaaagaaaagctctgaaaataacgcttcaagaaaac
tatgatgaagattcggatgttatcatgtttgccgctgctcagtactggatattggatgac
aatggcgaaactacatggtgtttacgtgactgtttggcggcacttggaatggtcggcttg
atggtagaaaggatctgctgttttgttgttagtttttgtgggataaagacgttcaggaaa
atgatggaagtgcaggcttcaatgagcaggcagacggtagctctgaataagaccctacta
ccttcaatcctgatgtacggcccagttggacttctgttctttgcgccacttttcgaatgg
aacctgcaacttttagtcagttcggctggtgccactacagctatttatcctgcatttgaa
cctttaattgtcattttctgtataagtttgttccgcagagcaacttttccgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGCATTGCTATTTTTGTACCCCT 139 219 394 Antisense
TACCCCTTCGCAATTTCTATAACAT 625 649 412 Antisense
TTTGCCGCTGCTCAGTACTGGATAT 155 669 541 Antisense
GGTGTTTACGTGACTGTTTGGCGGC 352 497 590 Antisense
CGGCACTTGGAATGGTCGGCTTGAT 307 233 611 Antisense
GAATAAGACCCTACTACCTTCAATC 374 327 738 Antisense
CAATCCTGATGTACGGCCCAGTTGG 143 181 758 Antisense
CCAGTTGGACTTCTGTTCTTTGCGC 339 265 775 Antisense
TTTAGTCAGTTCGGCTGGTGCCACT 394 673 825 Antisense
TGGTGCCACTACAGCTATTTATCCT 160 553 840 Antisense
TTCCGCAGAGCAACTTTTCCGTGCA 699 697 904 Antisense
Sequence Source Affymetrix Proprietary Database