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[189023_at] phospholipase

Description W02B12.1 /REP_DB=WormBase Gene ID /WP=CE14408 /TR=Q23119 /GB=CAA91393.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=phospholipase
Cluster 6grp_high1_10_10 > 07      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_total > 08      4grp_total > 58      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 383.7
(-0.8)
P 		559
(2.7)
P 		571.3
(3)
P 		277.3
(-3)
P 		294
B 358.8
(-2.5)
P 		557.8
(1.5)
P 		629.2
(3)
P 		334.5
(-3)
P 		295
C 404
(0.8)
P 		421.2
(1.2)
P 		499.6
(3)
P 		238.8
(-3)
P 		261
avr 382.2
(-0.9) 		512.7
(1.9) 		566.7
(3) 		283.5
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 279.6
(2.9)
A 		192.5
(0.5)
P 		249.4
(2.1)
P 		284
(3)
P 		136.1
(-1)
P 		63.1
(-3)
A 		221
B 363.8
(3)
P 		168.7
(-1.1)
P 		137.5
(-1.8)
P 		208.2
(-0.3)
P 		183.6
(-0.8)
P 		81.3
(-3)
P 		283
C 471.7
(3)
P 		219.7
(-0.9)
A 		274.6
(-0)
P 		166.3
(-1.7)
P 		163.4
(-1.8)
P 		83.3
(-3)
A 		388
avr 371.7
(3) 		193.6
(-0.6) 		220.5
(-0.1) 		219.5
(-0.1) 		161
(-1.3) 		75.9
(-3) 		296
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 139.7
(2.5)
P 		121.3
(1.5)
P 		149.3
(3)
P 		40.6
(-3)
P 		109
B 114.4
(0.5)
P 		137.8
(2.4)
P 		145.8
(3)
P 		71.3
(-3)
P 		75
C 133.7
(1.2)
P 		121.1
(0.6)
P 		174.1
(3)
P 		40.3
(-3)
P 		134
avr 129.3
(1.5) 		126.7
(1.3) 		156.4
(3) 		50.7
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 51.5
(0.8)
A 		68.5
(2.6)
P 		54.3
(1.1)
P 		72
(3)
P 		41.1
(-0.3)
P 		15.4
(-3)
A 		57
B 126.6
(3)
P 		56.2
(-1.4)
P 		33.4
(-2.8)
P 		55.2
(-1.4)
P 		74.6
(-0.2)
P 		30.3
(-3)
P 		96
C 174.8
(3)
P 		67
(-1.4)
A 		69.9
(-1.3)
P 		33.4
(-2.8)
P 		52.9
(-2)
P 		27.9
(-3)
A 		147
avr 117.6
(3) 		63.9
(-0.5) 		52.5
(-1.2) 		53.5
(-1.1) 		56.2
(-1) 		24.5
(-3) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189023_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3188
Sequence Type Exemplar sequence
Representative Public ID W02B12.1 NCBI
Target Description W02B12.1 /REP_DB=WormBase Gene ID /WP=CE14408 /TR=Q23119 /GB=CAA91393.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=phospholipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064039
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000002905 ENSEMBL cdna:SNAP chromosome:CEL140:II:11448817:11451098:1 None
NM_064039 NCBI Caenorhabditis elegans W02B12.1 (phospholipase) mRNA, complete cds. None
W02B12.1 ENSEMBL cdna:known chromosome:CEL140:II:11448936:11451285:1 gene:W02B12.1 None
GENEFINDER00000002924 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11448817:11451269:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11448932-11451266(+) 99.52 100.0
Public Domain and Genome References
Gene Title phospholipase
Ensembl W02B12.1
Entrez Gene 174746 Entrez gene
SwissProt Q23119 EMBL-EBI
WormBase CE03761 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8793.1.S1_S_AT similar to phospholipase B cfa
CANINE_2:CFAAFFX.8798.1.S1_S_AT similar to phospholipase B cfa
CHICKEN:GGAAFFX.6308.3.S1_S_AT phospholipase B1 gga
CHICKEN:GGAAFFX.6308.4.S1_S_AT phospholipase B1 gga
CHICKEN:GGAAFFX.6310.1.S1_AT phospholipase B1 gga
HU35KSUBD:RC_AA418082_AT phospholipase B1 hs
U133_X3P:HS.98286.0.A1_3P_AT phospholipase B1 hs
HG-U95B:42161_AT phospholipase B1 hs
HG-U133_PLUS_2:235703_AT Phospholipase B1 hs
HG-U133B:235703_AT Phospholipase B1 hs
HG-U95C:59861_AT Phospholipase B1 hs
HG-U95D:68987_AT Phospholipase B1 hs
HG-U95D:70126_AT Phospholipase B1 hs
HG-U95E:82734_AT Phospholipase B1 hs
MOUSE430_2:1431535_AT phospholipase B1 mm
MOE430B:1431535_AT phospholipase B1 mm
MOE430B:1430666_AT phospholipase B1 mm
MOUSE430_2:1430666_AT phospholipase B1 mm
RAE230A:1370447_AT phospholipase B rn
RAT230_2:1370447_AT phospholipase B rn
RG-U34A:E13935CDS_S_AT phospholipase B rn
RG-U34A:RC_AI639174_S_AT phospholipase B rn
RG-U34B:RC_AI044691_AT Phospholipase B rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91393 Hypothetical protein W02B12.1 [Caenorhabditis elegans] ref|NP_496440.1| W02B12.1 [Caenorhabditis elegans] 0.0
blast CAE59506 Hypothetical protein CBG02892 [Caenorhabditis briggsae] 0.0
blast CAE59506 Hypothetical protein CBG02892 [Caenorhabditis briggsae] 1.0E-180
blast CAE61529 Hypothetical protein CBG05432 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 2.5E-12
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 2.5E-12
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 2.5E-12
Sequence
Target Sequence 
>C. ELEGANS:189023_AT
atctgccaaggcgcacgaatttcaaatttaaactgttcagtagaatttcagtttgcaaaa
ctttttcttcgtggcgtgagtttaaaaattcaaatatttattccagaacaattgtctcac
tgaccggaatgttcaacatgagaatgcttcgtaagattgacaagaagaagtatttctgcg
aaggacttcatacattcgaatgtgattgtgagtccaacaaacaattcactgatgatgata
ttcaaggagtttgcttcggatatatgaatgctgaaaaagatattcaaaacacgggattat
tcgataacaaggatgatttcacgtttgtagttcaaccatttttcaacgggattctggatc
caccatacgcgagcccaggagttgttgacatgacattctttgctccagattgcttccatt
tctcggcttacgggcatggaaatattggaatgcatctttggaacacaattgttcaaccag
ttggattcaaacaaaccagtgtcaatttgagtgatccttcagttggattacattgcccaa
gtacaaactgtccgttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGCCAAGGCGCACGAATTTCAA 527 33 638 Antisense
GCAAAACTTTTTCTTCGTGGCGTGA 541 205 692 Antisense
TATTCCAGAACAATTGTCTCACTGA 591 663 736 Antisense
GTCTCACTGACCGGAATGTTCAACA 123 469 751 Antisense
GATTTCACGTTTGTAGTTCAACCAT 16 429 952 Antisense
TTCAACCATTTTTCAACGGGATTCT 586 683 968 Antisense
CAACGGGATTCTGGATCCACCATAC 236 187 981 Antisense
ACCATACGCGAGCCCAGGAGTTGTT 543 85 999 Antisense
GACATTCTTTGCTCCAGATTGCTTC 593 369 1029 Antisense
TCCATTTCTCGGCTTACGGGCATGG 206 589 1052 Antisense
GCCCAAGTACAAACTGTCCGTTCTT 435 285 1172 Antisense
Sequence Source Affymetrix Proprietary Database