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[189022_at] Yeast CC1 like

Description ZK792.7 /REP_DB=WormBase Gene ID /WP=CE03828 /TR=Q23592 /GB=CAA92632.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast CC1 like
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 60      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 53      6grp_total > 61      4grp_total > 04      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 804
1 2 3 4 range
A 665.2
(-1.7)
P 		527.3
(-3)
P 		646.2
(-1.9)
P 		1169.5
(3)
P 		642
B 846.7
(-0.6)
P 		560.9
(-3)
P 		614.8
(-2.5)
P 		1262.9
(3)
P 		702
C 769.6
(-1.1)
P 		519.7
(-3)
P 		547.1
(-2.8)
P 		1324
(3)
P 		804
avr 760.5
(-1.1) 		536
(-3) 		602.7
(-2.4) 		1252.1
(3) 		716

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 954
1 2 3 4 5 6 range
A 732.1
(-0.6)
P 		558.9
(-2.4)
P 		1062.7
(2.7)
P 		1088.7
(3)
P 		756.3
(-0.4)
P 		498.9
(-3)
P 		590
B 844.4
(-0.8)
P 		904.1
(-0.3)
P 		767.1
(-1.4)
P 		1301.4
(3)
P 		741.8
(-1.6)
P 		575.4
(-3)
P 		726
C 541.7
(-1.2)
P 		717.3
(0.4)
P 		1004.7
(3)
P 		915.8
(2.2)
P 		507.1
(-1.5)
P 		347.7
(-3)
P 		657
avr 706.1
(-0.8) 		726.8
(-0.6) 		944.8
(1.5) 		1102
(3) 		668.4
(-1.1) 		474
(-3) 		628
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 242.2
(3)
P 		114.5
(-3)
P 		168.9
(-0.4)
P 		171.2
(-0.3)
P 		128
B 270
(3)
P 		138.5
(-3)
P 		142.5
(-2.8)
P 		269.1
(3)
P 		132
C 254.8
(3)
P 		149.4
(-3)
P 		190.7
(-0.6)
P 		223.2
(1.2)
P 		105
avr 255.7
(3) 		134.1
(-3) 		167.4
(-1.4) 		221.2
(1.3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 134.9
(-2.5)
P 		198.8
(0)
P 		231.4
(1.3)
P 		276.1
(3)
P 		228.2
(1.1)
P 		121.5
(-3)
P 		155
B 293.8
(1.1)
P 		300.9
(1.3)
P 		186.3
(-3)
P 		344.7
(3)
P 		301.4
(1.4)
P 		214.5
(-1.9)
P 		158
C 200.8
(0.6)
P 		218.9
(1.4)
P 		255.7
(3)
P 		184.2
(-0.1)
P 		164.1
(-0.9)
P 		116.4
(-3)
P 		139
avr 209.8
(0) 		239.5
(1.5) 		224.5
(0.8) 		268.3
(3) 		231.2
(1.1) 		150.8
(-3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189022_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10026
Sequence Type Exemplar sequence
Representative Public ID ZK792.7 NCBI
Target Description ZK792.7 /REP_DB=WormBase Gene ID /WP=CE03828 /TR=Q23592 /GB=CAA92632.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast CC1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069813 NCBI Caenorhabditis elegans ZK792.7 (ZK792.7) mRNA, complete cds. 11/11 None
SNAP00000023875 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11694520:11696347:1 11/11 None
GENEFINDER00000023881 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11694520:11696347:1 11/11 None
ZK792.7 ENSEMBL cdna:known chromosome:CEL140:IV:11694896:11696347:1 gene:ZK792.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11694901-11696353(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast CC1 like
Ensembl ZK792.7
Entrez Gene 191425 Entrez gene
SwissProt Q23592 EMBL-EBI
WormBase CE03828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92632 Hypothetical protein ZK792.7 [Caenorhabditis elegans] ref|NP_502214.1| ZK792.7 [Caenorhabditis elegans] 1.0E-134
blast CAE62068 Hypothetical protein CBG06090 [Caenorhabditis briggsae] 1.0E-121
blast CAE62068 Hypothetical protein CBG06090 [Caenorhabditis briggsae] 4.0E-77
blast EAA12253 ENSANGP00000018488 [Anopheles gambiae str. PEST] ref|XP_317671.2| ENSANGP00000018488 [Anopheles gambiae str. PEST] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.9E-5
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502214.1 1 216-235
ZK792.7 1 216-235
SNAP00000023875 2 9-26,310-329
GENEFINDER00000023881 2 9-26,310-329
Sequence
Target Sequence 
>C. ELEGANS:189022_AT
tgacccatgttccgtatctagtcgaaggatacaagcactcggatgtggggcaaaaaatgg
atttaatactatctgctcacgatcacactactggaatctatgaatatcagcgatcggcgc
cacgagccgttctattcacacgagtttctgacgtttcaccaacatacttcaaaaatatag
ggcaaaatgaaccgcttattgagttacaaacgcctacatgttcatatcgaatgggagttt
actcaatgggatacggagccctttcaatttgtcgtctgaacgatgactacaggagtgttc
aagttcaatactctgttctttggcttccttctcgatttgctcaactctttttatacatat
tctcactaatattctccgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCCATGTTCCGTATCTAGTCGA 449 567 323 Antisense
GGATACAAGCACTCGGATGTGGGGC 94 505 349 Antisense
AATACTATCTGCTCACGATCACACT 60 173 387 Antisense
TGAATATCAGCGATCGGCGCCACGA 209 575 423 Antisense
GAGCCGTTCTATTCACACGAGTTTC 64 387 446 Antisense
GAGTTTCTGACGTTTCACCAACATA 183 399 464 Antisense
ACAAACGCCTACATGTTCATATCGA 238 111 528 Antisense
TACGGAGCCCTTTCAATTTGTCGTC 628 645 574 Antisense
TTCAATACTCTGTTCTTTGGCTTCC 473 685 626 Antisense
GATTTGCTCAACTCTTTTTATACAT 674 427 656 Antisense
TATTCTCACTAATATTCTCCGCTTT 81 665 680 Antisense
Sequence Source Affymetrix Proprietary Database