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[189019_at] cytochrome b5

Description C31E10.7 /REP_DB=WormBase Gene ID /WP=CE08507 /TR=Q93315 /GB=CAB01732.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome b5
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 63      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 37      6grp_total > 64      4grp_total > 01      6grp_high1_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5958
1 2 3 4 range
A 2937
(-2.8)
P 		2766.8
(-3)
P 		3215.5
(-2.4)
P 		7603.7
(3)
P 		4837
B 3080.8
(-2.8)
P 		2928.3
(-3)
P 		3765.6
(-2.1)
P 		8475
(3)
P 		5547
C 3199.9
(-3)
P 		3354.2
(-2.8)
P 		3641.7
(-2.5)
P 		8725.1
(3)
P 		5525
avr 3072.6
(-2.9) 		3016.4
(-3) 		3540.9
(-2.4) 		8267.9
(3) 		5252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2203
1 2 3 4 5 6 range
A 4785.1
(-1.8)
P 		4433
(-3)
P 		6216.8
(3)
P 		6123
(2.7)
P 		4709.4
(-2.1)
P 		4811.1
(-1.7)
P 		1784
B 4243.1
(-3)
P 		4796.8
(-1)
P 		5893.2
(3)
P 		5423.8
(1.3)
P 		4469.7
(-2.2)
P 		5269
(0.7)
P 		1650
C 4511
(-1.3)
P 		4543
(-1.2)
P 		5743.8
(3)
P 		5699.5
(2.8)
P 		4013.8
(-3)
P 		5713.8
(2.9)
P 		1730
avr 4513.1
(-2.6) 		4590.9
(-2.3) 		5951.3
(3) 		5748.8
(2.2) 		4397.6
(-3) 		5264.6
(0.3) 		1554
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1205
1 2 3 4 range
A 1069.3
(2.5)
P 		600.6
(-3)
P 		840.6
(-0.2)
P 		1113
(3)
P 		512
B 982.4
(-1.6)
P 		723.2
(-3)
P 		872.6
(-2.2)
P 		1806
(3)
P 		1083
C 1059.2
(-1.9)
P 		964.3
(-3)
P 		1269.2
(0.6)
P 		1471.2
(3)
P 		507
avr 1037
(-0.7) 		762.7
(-3) 		994.1
(-1) 		1463.4
(3) 		701

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1083
1 2 3 4 5 6 range
A 882.1
(-3)
P 		1576.6
(3)
P 		1353.9
(1.1)
P 		1552.9
(2.8)
P 		1421.1
(1.7)
P 		1171.4
(-0.5)
P 		695
B 1476.4
(-2.5)
P 		1596.6
(-1.1)
P 		1431
(-3)
P 		1436.6
(-2.9)
P 		1816
(1.3)
P 		1964.8
(3)
P 		534
C 1672
(1.1)
P 		1386.2
(-1.1)
P 		1461.9
(-0.5)
P 		1146.2
(-3)
P 		1298.8
(-1.8)
P 		1912.7
(3)
P 		767
avr 1343.5
(-3) 		1519.8
(0.1) 		1415.6
(-1.7) 		1378.6
(-2.4) 		1512
(-0) 		1683
(3) 		340
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17429
Sequence Type Exemplar sequence
Representative Public ID C31E10.7 NCBI
Target Description C31E10.7 /REP_DB=WormBase Gene ID /WP=CE08507 /TR=Q93315 /GB=CAB01732.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome b5
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077934 NCBI Caenorhabditis elegans C31E10.7 (C31E10.7) mRNA, complete cds. 11/11 None
SNAP00000027029 ENSEMBL cdna:SNAP chromosome:CEL140:X:14001845:14002843:1 11/11 None
GENEFINDER00000027032 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14001845:14002843:1 11/11 None
C31E10.7.1 ENSEMBL cdna:known chromosome:CEL140:X:14001842:14002972:1 gene:C31E10.7 11/11 None
C31E10.7.2 ENSEMBL cdna:known chromosome:CEL140:X:14001844:14002973:1 gene:C31E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14001832-14002843(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome b5
Ensembl C31E10.7
Entrez Gene 181510 Entrez gene
SwissProt Q93315 EMBL-EBI
WormBase CE37487 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.11724.1.S1_S_AT similar to Cytochrome b5 cfa
Protein Similarities
Method ID Description E-Value
blast CAB01732 Hypothetical protein C31E10.7 [Caenorhabditis elegans] ref|NP_510335.2| C31E10.7 [Caenorhabditis elegans] 1.0E-61
blast CAE63049 Hypothetical protein CBG07320 [Caenorhabditis briggsae] 9.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001199 EMBL-EBI Cytochrome b5 6.1E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510335.2 1 114-133
C31E10.7.1 1 114-133
C31E10.7.2 1 114-133
SNAP00000027029 1 114-133
GENEFINDER00000027032 1 114-133
Sequence
Target Sequence 
>C. ELEGANS:189019_AT
ggccgatcttaagcaaatcacccttaaggaaattgccgagcacaacacaaacaaatcagc
atggcttgtaattggaaacaaggtgtttgatgtgaccaagttcttggacgagcatccggg
aggttgcgaggtccttcttgagcaggctggaagtgatggaactgaggcattcgaggatgt
tgggcactccactgacgctaggcatatgaaggacgagtatttgatcggagaagtcgttgc
atctgagagaaaaacctactcgtatgacaagaagcaatggaagtctaccaccgaacagga
taacaagcagagaggaggagagtcaatgcaaaccgacaacattgtttacttcgccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCGATCTTAAGCAAATCACCCTT 643 541 27 Antisense
GGAAATTGCCGAGCACAACACAAAC 419 527 54 Antisense
AGGTGTTTGATGTGACCAAGTTCTT 527 57 107 Antisense
CCAAGTTCTTGGACGAGCATCCGGG 289 275 122 Antisense
CGAGCATCCGGGAGGTTGCGAGGTC 86 247 135 Antisense
AGGTCCTTCTTGAGCAGGCTGGAAG 63 41 155 Antisense
TCGAGGATGTTGGGCACTCCACTGA 152 603 197 Antisense
CACTCCACTGACGCTAGGCATATGA 128 199 211 Antisense
TCGGAGAAGTCGTTGCATCTGAGAG 347 603 251 Antisense
GGAAGTCTACCACCGAACAGGATAA 393 525 305 Antisense
CGACAACATTGTTTACTTCGCCCTT 562 251 360 Antisense
Sequence Source Affymetrix Proprietary Database