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[189018_at] phospholipase

Description D1037.5 /REP_DB=WormBase Gene ID /WP=CE26917 /TR=Q9TYS0 /GB=AAK21368.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=phospholipase
Cluster 6grp_total > 58      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 12.1
(-2)
A 		5.7
(-3)
A 		24.6
(-0.2)
A 		45.7
(3)
A 		40
B 11.1
(-1)
A 		23.5
(3)
A 		4.7
(-3)
A 		5
(-2.9)
A 		19
C 6.4
(-2.6)
A 		29.2
(3)
A 		4.9
(-3)
A 		28
(2.7)
A 		24
avr 9.9
(-3) 		19.5
(0.5) 		11.4
(-2.4) 		26.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 11.3
(-2.4)
A 		18.6
(-1.7)
A 		5
(-3)
A 		33.7
(-0.2)
A 		30.5
(-0.5)
A 		66.8
(3)
A 		62
B 50.1
(3)
A 		4.1
(-3)
A 		4.7
(-2.9)
A 		11.8
(-2)
A 		17.4
(-1.3)
A 		50.4
(3)
A 		46
C 8.8
(-2.3)
A 		37.1
(3)
A 		5
(-3)
A 		30
(1.7)
A 		9.6
(-2.1)
A 		34.9
(2.6)
A 		32
avr 23.4
(-0.6) 		19.9
(-1) 		4.9
(-3) 		25.2
(-0.3) 		19.2
(-1.1) 		50.7
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.4
(0.5)
A 		1.2
(-3)
A 		6.4
(2.7)
A 		6.7
(3)
A 		6
B 3.6
(0.2)
A 		5.8
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		5
C 2.1
(-2.6)
A 		8.4
(3)
A 		1.7
(-3)
A 		4.7
(-0.3)
A 		7
avr 3.4
(-2.1) 		5.1
(3) 		3.1
(-3) 		4.2
(0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.1
(-2.6)
A 		6.6
(-0.8)
A 		1.1
(-3)
A 		8.6
(-0)
A 		9.2
(0.2)
A 		16.3
(3)
A 		15
B 17.4
(2.5)
A 		1.4
(-2.9)
A 		1.1
(-3)
A 		3.1
(-2.3)
A 		7.1
(-1)
A 		18.8
(3)
A 		18
C 3.3
(-1.8)
A 		11.3
(2.8)
A 		1.3
(-3)
A 		6
(-0.3)
A 		3.1
(-2)
A 		11.7
(3)
A 		10
avr 7.6
(-0.3) 		6.4
(-0.8) 		1.2
(-3) 		5.9
(-1) 		6.5
(-0.8) 		15.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.51
Sequence Type Exemplar sequence
Representative Public ID D1037.5 NCBI
Target Description D1037.5 /REP_DB=WormBase Gene ID /WP=CE26917 /TR=Q9TYS0 /GB=AAK21368.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=phospholipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058800
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024410 ENSEMBL cdna:SNAP chromosome:CEL140:I:3690183:3694016:-1 None
GENEFINDER00000024418 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3690183:3694016:-1 None
NM_058800 NCBI Caenorhabditis elegans D1037.5 (phospholipase) mRNA, complete cds. A 
D1037.5 ENSEMBL cdna:known chromosome:CEL140:I:3690183:3694016:-1 gene:D1037.5 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3691124-3694016(-) 100.0 100.0
Public Domain and Genome References
Gene Title phospholipase
Ensembl D1037.5
Entrez Gene 171937 Entrez gene
WormBase CE39008 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21368 Hypothetical protein D1037.5 [Caenorhabditis elegans] ref|NP_491201.1| D1037.5 [Caenorhabditis elegans] 0.0
blast T33857 hypothetical protein D1037.5 - Caenorhabditis elegans 0.0
blast CAE66684 Hypothetical protein CBG12023 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 2.0E-45
Pfam IPR002641 EMBL-EBI Patatin 2.0E-45
Pfam IPR002110 EMBL-EBI Ankyrin 2.6
Pfam IPR002110 EMBL-EBI Ankyrin 0.0013
Pfam IPR002641 EMBL-EBI Patatin 2.0E-45
Pfam IPR002110 EMBL-EBI Ankyrin 2.6
Pfam IPR002110 EMBL-EBI Ankyrin 0.0013
Sequence
Target Sequence 
>C. ELEGANS:189018_AT
atgcgtgatcgagttttcatccgtggagctgacaaagccgttccaaaatatagttcaaac
ggtatggagtacatcgcccgccacgtcacaacttgggaagattcgaaaatgtcgagtatc
aaaagacaccgagcaattgttactgtagctgatactcgaatggttccacctcaacttctc
ctcttccgatcctatcgtccagaaatgccagaggaagcgtgtgaacactataagttcctg
gatccaacgaaggttgagctgtggaagactctgagatgcacaaccgcggctccatacttc
ttcgagtcattcaatgggctttctgatggtggtttgattgcgaacaatccgacgcttgca
ctgatctctgatttcttcctcacgaataaacttgaaaaatcgtttgcgaaaagctcatct
gaacgagaaaaccgtggaaactggaagattggatgtgtcatttcacttggaacaggagta
tttccaacggaaaagattgatggaatcgatttgattgtggcgcatgcggttagtacgccc
ttttacacgtccttttacgagaaatttgcaagagcgccgcacatttttttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTGATCGAGTTTTCATCCGTG 648 41 790 Antisense
TCCGTGGAGCTGACAAAGCCGTTCC 383 595 809 Antisense
AACGGTATGGAGTACATCGCCCGCC 654 143 847 Antisense
GATACTCGAATGGTTCCACCTCAAC 67 425 940 Antisense
TCTTCCGATCCTATCGTCCAGAAAT 634 615 971 Antisense
GCTCCATACTTCTTCGAGTCATTCA 586 297 1078 Antisense
ATTGCGAACAATCCGACGCTTGCAC 450 7 1126 Antisense
CTTGCACTGATCTCTGATTTCTTCC 191 219 1144 Antisense
TCGATTTGATTGTGGCGCATGCGGT 130 601 1295 Antisense
TGCGGTTAGTACGCCCTTTTACACG 483 503 1314 Antisense
CAAGAGCGCCGCACATTTTTTTTTC 684 181 1358 Antisense
Sequence Source Affymetrix Proprietary Database