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[189015_at] C-type lectin

Description C54D1.2 /REP_DB=WormBase Gene ID /WP=CE06978 /TR=Q18821 /GB=AAC48150.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C-type lectin
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 59      6grp_highest_nonorm > 90      6grp_total > 91      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 285.5
(2.1)
P 		242.2
(1)
P 		319.3
(3)
P 		93.3
(-3)
P 		226
B 282.1
(1.3)
P 		192.1
(-0.3)
P 		372.2
(3)
P 		47.5
(-3)
A 		325
C 323.5
(3)
P 		156.4
(-0.5)
P 		307.4
(2.7)
P 		34.8
(-3)
P 		289
avr 297
(2.2) 		196.9
(0) 		333
(3) 		58.5
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 137.2
(0.4)
P 		74.8
(-2.7)
P 		97.5
(-1.6)
P 		190.8
(3)
P 		112.8
(-0.8)
P 		69.1
(-3)
P 		122
B 72.3
(-3)
P 		138.6
(2.4)
P 		104.1
(-0.4)
P 		146.4
(3)
P 		144.2
(2.8)
P 		73.5
(-2.9)
P 		74
C 90.7
(-1.4)
P 		155.8
(3)
P 		79.2
(-2.2)
P 		124.6
(0.9)
P 		106.4
(-0.3)
P 		66.6
(-3)
P 		89
avr 100.1
(-0.8) 		123.1
(0.8) 		93.6
(-1.3) 		153.9
(3) 		121.1
(0.7) 		69.7
(-3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 104
(3)
P 		52.6
(-0.4)
P 		83.5
(1.6)
P 		13.7
(-3)
P 		90
B 90
(3)
P 		47.5
(-0.2)
P 		86.2
(2.7)
P 		10.1
(-3)
A 		80
C 107.1
(3)
P 		45
(-0.7)
P 		107.1
(3)
P 		5.9
(-3)
P 		101
avr 100.4
(3) 		48.4
(-0.4) 		92.3
(2.5) 		9.9
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 25.3
(-1.4)
P 		26.6
(-1.1)
P 		21.2
(-2.2)
P 		48.4
(3)
P 		34
(0.3)
P 		16.8
(-3)
P 		32
B 25.2
(-3)
P 		46.1
(0.8)
P 		25.3
(-3)
P 		38.8
(-0.6)
P 		58.6
(3)
P 		27.4
(-2.6)
P 		33
C 33.6
(-0.1)
P 		47.5
(3)
P 		20.2
(-3)
P 		25.1
(-1.9)
P 		34.4
(0.1)
P 		22.3
(-2.5)
P 		27
avr 28
(-1.3) 		40.1
(2.3) 		22.2
(-3) 		37.4
(1.5) 		42.3
(3) 		22.2
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17080
Sequence Type Exemplar sequence
Representative Public ID C54D1.2 NCBI
Target Description C54D1.2 /REP_DB=WormBase Gene ID /WP=CE06978 /TR=Q18821 /GB=AAC48150.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C-type lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076801 NCBI Caenorhabditis elegans C54D1.2 (C54D1.2) mRNA, complete cds. 11/11 None
SNAP00000023884 ENSEMBL cdna:SNAP chromosome:CEL140:X:7139850:7140443:1 11/11 None
GENEFINDER00000023895 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7139850:7140443:1 11/11 None
C54D1.2 ENSEMBL cdna:known chromosome:CEL140:X:7139850:7140443:1 gene:C54D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7139848-7140442(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin
Ensembl C54D1.2
Entrez Gene 183775 Entrez gene
SwissProt Q18821 EMBL-EBI
WormBase CE06978 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48150 Hypothetical protein C54D1.2 [Caenorhabditis elegans] ref|NP_509202.1| C54D1.2 [Caenorhabditis elegans] 1.0E-102
blast CAE65847 Hypothetical protein CBG10980 [Caenorhabditis briggsae] 3.0E-67
blast CAA20982 Hypothetical protein Y38H6C.8 [Caenorhabditis elegans] ref|NP_507951.1| Y38H6C.8 [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-17
Sequence
Target Sequence 
>C. ELEGANS:189015_AT
atgcttcgtgttttgttctttactcttgtcgcgcttttgtgttttgtgtcaccaaattgt
cttcctggagatactccatttgagatttattgtttttcatacaatcgagtacatggaaca
ttcaatgactccgatgctcattgcttgaaaaccgttggtggaagtctggtatcaattcac
agcatgatcgaaaacaactggattcaaaaactagctgttgataatctagatgctgactat
gacttgttctggattggtggaagcgacgaaggacatacaaatgactggagatggacagat
gggagcgttttgaacttcaccaatcccggacctggacagcctcttgaagatcgtcattgt
ggagcaatgcaactgtcaacaggaagatggttttccgatttgtgcacagttaagcatcag
ttcctgtgccagtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTCGTGTTTTGTTCTTTACTC 40 43 13 Antisense
TGTCGCGCTTTTGTGTTTTGTGTCA 671 557 39 Antisense
GTGTCACCAAATTGTCTTCCTGGAG 444 485 58 Antisense
GGAACATTCAATGACTCCGATGCTC 548 529 127 Antisense
TGACTCCGATGCTCATTGCTTGAAA 375 571 138 Antisense
GATGCTGACTATGACTTGTTCTGGA 133 415 241 Antisense
GAGCGTTTTGAACTTCACCAATCCC 73 387 315 Antisense
ACCTGGACAGCCTCTTGAAGATCGT 31 89 342 Antisense
GTGGAGCAATGCAACTGTCAACAGG 240 491 371 Antisense
GATGGTTTTCCGATTTGTGCACAGT 54 409 398 Antisense
AAGCATCAGTTCCTGTGCCAGTATC 393 151 424 Antisense
Sequence Source Affymetrix Proprietary Database