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[189014_s_at] 7TM chemoreceptor, srw family /// 7TM chemoreceptor, srw family

Description H27D07.4 /REP_DB=WormBase Gene ID /WP=CE25034 /TR=O61910 /GB=AAG24158.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemorecptor
Cluster 6grp_total > 52      4grp_total > 0      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 2.4
(-3)
A 		2.8
(-2.9)
A 		2.3
(-3)
A 		25.3
(3)
A 		23
B 4.7
(-1.8)
A 		2.3
(-3)
A 		12
(1.9)
A 		14.1
(3)
A 		12
C 2.9
(-3)
A 		4.3
(-0.2)
A 		5.9
(3)
A 		4.1
(-0.6)
A 		3
avr 3.3
(-2.9) 		3.1
(-3) 		6.7
(-1.1) 		14.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7.1
(-2.1)
A 		2.7
(-2.9)
A 		35.8
(3)
A 		2.4
(-2.9)
A 		2.6
(-2.9)
A 		2.1
(-3)
A 		34
B 2.6
(-3)
A 		4.8
(3)
A 		3.4
(-0.8)
A 		3.5
(-0.5)
A 		4
(0.8)
A 		2.7
(-2.7)
A 		2
C 1.7
(-3)
A 		17.9
(2.3)
A 		2.1
(-2.8)
A 		19.9
(3)
A 		1.6
(-3)
A 		2.6
(-2.7)
A 		18
avr 3.8
(-2.3) 		8.5
(0.2) 		13.8
(3) 		8.6
(0.2) 		2.7
(-2.9) 		2.5
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.9
(-2.4)
A 		0.6
(-3)
A 		0.6
(-3)
A 		3.7
(3)
A 		3
B 1.5
(-0.8)
A 		0.6
(-3)
A 		2.8
(2.5)
A 		3
(3)
A 		2
C 1
(-1.7)
A 		1.2
(-0.9)
A 		2.1
(3)
A 		0.7
(-3)
A 		1
avr 1.1
(-1.9) 		0.8
(-3) 		1.8
(0.5) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.3
(-2.3)
A 		1
(-2.6)
A 		7.8
(3)
A 		0.6
(-2.9)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		7
B 0.9
(-2.3)
A 		1.6
(3)
A 		0.8
(-3)
A 		0.9
(-2.3)
A 		1.6
(3)
A 		1
(-1.5)
A 		1
C 0.6
(-2.9)
A 		5.5
(3)
A 		0.5
(-3)
A 		4
(1.2)
A 		0.5
(-3)
A 		0.9
(-2.5)
A 		5
avr 0.9
(-2.7) 		2.7
(2.2) 		3
(3) 		1.8
(-0.3) 		1
(-2.5) 		0.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15842
Sequence Type Exemplar sequence
Representative Public ID H27D07.4 NCBI
Target Description H27D07.4 /REP_DB=WormBase Gene ID /WP=CE25034 /TR=O61910 /GB=AAG24158.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemorecptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071405(11), NM_071398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071405 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-138) (srw-138) mRNA, complete cds. 11/11 A 
NM_071398 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-137) (srw-137) mRNA, complete cds. 11/11 A 
SNAP00000011846 ENSEMBL cdna:SNAP chromosome:CEL140:V:2961873:2962887:-1 11/11 None
GENEFINDER00000011852 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2961459:2966529:-1 11/11 None
H27D07.4 ENSEMBL cdna:known chromosome:CEL140:V:2942398:2943786:-1 gene:H27D07.4 11/11 A 
C44C3.3 ENSEMBL cdna:known chromosome:CEL140:V:2961509:2962887:-1 gene:C44C3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2942447-2943786(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
7TM chemoreceptor, srw family
Gene Symbol srw-138
srw-137
Ensembl H27D07.4
C44C3.3
Entrez Gene 183442 Entrez gene
186789 Entrez gene
SwissProt Q8IFY3 EMBL-EBI
O61910 EMBL-EBI
WormBase CE32611 Wormbase
CE34573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73865 Serpentine receptor, class w protein 138 [Caenorhabditis elegans] ref|NP_503806.2| Serpentine Receptor, class W family member (srw-138) [Caenorhabditis elegans] 0.0
blast T25624 hypothetical protein C44C3.3 - Caenorhabditis elegans 0.0
blast AAG24158 Serpentine receptor, class w protein 137 [Caenorhabditis elegans] ref|NP_503799.2| Serpentine Receptor, class W family member (srw-137) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503806.2 6 36-58,68-87,157-179,221-243,270-292,307-329
NP_503799.2 6 36-58,68-87,157-179,221-243,270-292,307-329
H27D07.4 6 36-58,68-87,157-179,221-243,270-292,307-329
C44C3.3 6 36-58,68-87,157-179,221-243,270-292,307-329
SNAP00000011846 5 36-58,68-87,157-179,221-243,270-292
GENEFINDER00000011852 19 37-59,66-85,95-117,149-171,211-233,257-279,355-377,402-424,434-456,477-496,534-565,582-604,624-646,684-706,716-735,805-827,869-891,918-940,955-977
Sequence
Target Sequence 
>C. ELEGANS:189014_S_AT
ctttctcatcgcgcttattcgaacactagtcatcagaaatcctctgaaccaaagctacca
gaaattagccggtcctgccctctctggttttgcaattctcggaatattatttttgagtct
tccgatttcagtggtcttttctctggaatatgaactaatgaaaagttctgtgccatcatt
ttgtaattcaactgaaacaacttactacacagttatatctgatatgtttgcggataatga
tgggtattatttgaaaatattttcaattgttaacgggctcgtttcaaatataattccctg
cgtgctcttcccgatagtaactttcctattggtcgtcgagctctggaaatcggataaaaa
gcgaaaaaatctttcttccactgcaaatgtaaatgactctagaaaaactactagactggt
attctacatatctattacgttttttatcgccgaatttccgcttggaataacattgggtgc
aacttggttttttctcgatgttcctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCTCATCGCGCTTATTCGAACA 318 223 405 Antisense
GCGCTTATTCGAACACTAGTCATCA 1 289 415 Antisense
GAAATCCTCTGAACCAAAGCTACCA 264 359 440 Antisense
CTACCAGAAATTAGCCGGTCCTGCC 6 225 459 Antisense
CCTCTCTGGTTTTGCAATTCTCGGA 514 267 483 Antisense
GAGTCTTCCGATTTCAGTGGTCTTT 675 399 519 Antisense
ATTTCAGTGGTCTTTTCTCTGGAAT 698 15 529 Antisense
AAGTTCTGTGCCATCATTTTGTAAT 30 157 567 Antisense
TTCCTATTGGTCGTCGAGCTCTGGA 567 699 727 Antisense
TTTATCGCCGAATTTCCGCTTGGAA 35 675 847 Antisense
TGGTTTTTTCTCGATGTTCCTGGAA 363 551 889 Antisense
Sequence Source Affymetrix Proprietary Database