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[189013_at] 7TM chemoreceptor, srw family

Description H27D07.4 /REP_DB=WormBase Gene ID /WP=CE25034 /TR=O61910 /GB=AAG24158.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemorecptor
Cluster 6grp_total > 82      4grp_total > 12      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 10.6
(-1.6)
A 		4
(-2.7)
A 		1.9
(-3)
A 		39.2
(3)
A 		37
B 3.1
(-2.9)
A 		7
(3)
A 		3
(-3)
A 		3.8
(-1.8)
A 		4
C 16.8
(2)
A 		4.9
(-3)
A 		6.1
(-2.5)
A 		19.1
(3)
A 		14
avr 10.2
(-0.7) 		5.3
(-2.4) 		3.7
(-3) 		20.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.3
(-1.2)
A 		1.9
(-3)
A 		5.4
(-2)
A 		6.5
(-1.7)
A 		23.7
(3)
A 		3.1
(-2.7)
A 		22
B 10.4
(-0.2)
A 		2.1
(-3)
A 		7.3
(-1.2)
A 		6.6
(-1.5)
A 		19.6
(3)
A 		4.4
(-2.2)
A 		18
C 3.3
(-2.5)
A 		24.9
(2.9)
A 		21.8
(2.1)
A 		25.2
(3)
A 		3.8
(-2.4)
A 		1.4
(-3)
A 		24
avr 7.3
(-1) 		9.6
(0.1) 		11.5
(1) 		12.8
(1.6) 		15.7
(3) 		3
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.9
(0.9)
A 		0.9
(-2.5)
A 		0.5
(-3)
A 		5.7
(3)
A 		5
B 1
(-1.2)
A 		1.7
(3)
A 		0.7
(-3)
A 		0.8
(-2.4)
A 		1
C 5.6
(3)
A 		1.4
(-3)
A 		2.1
(-2)
A 		3.2
(-0.4)
A 		4
avr 3.5
(3) 		1.3
(-2.5) 		1.1
(-3) 		3.2
(2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-2.3)
A 		0.7
(-3)
A 		1.2
(-2.5)
A 		1.6
(-2.2)
A 		7.1
(3)
A 		0.7
(-3)
A 		6
B 3.6
(-0.6)
A 		0.7
(-3)
A 		1.8
(-2.1)
A 		1.8
(-2.1)
A 		8
(3)
A 		1.7
(-2.2)
A 		7
C 1.2
(-2.4)
A 		7.6
(3)
A 		5.5
(1.2)
A 		5.1
(0.9)
A 		1.2
(-2.4)
A 		0.5
(-3)
A 		7
avr 2.1
(-1.5) 		3
(-0.3) 		2.8
(-0.5) 		2.8
(-0.5) 		5.4
(3) 		1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15842
Sequence Type Exemplar sequence
Representative Public ID H27D07.4 NCBI
Target Description H27D07.4 /REP_DB=WormBase Gene ID /WP=CE25034 /TR=O61910 /GB=AAG24158.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemorecptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071398 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-137) (srw-137) mRNA, complete cds. 11/11 A 
H27D07.4 ENSEMBL cdna:known chromosome:CEL140:V:2942398:2943786:-1 gene:H27D07.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2942447-2943786(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-137
Ensembl H27D07.4
Entrez Gene 186789 Entrez gene
SwissProt O61910 EMBL-EBI
WormBase CE34573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24158 Serpentine receptor, class w protein 137 [Caenorhabditis elegans] ref|NP_503799.2| Serpentine Receptor, class W family member (srw-137) [Caenorhabditis elegans] 0.0
blast AAN73865 Serpentine receptor, class w protein 138 [Caenorhabditis elegans] ref|NP_503806.2| Serpentine Receptor, class W family member (srw-138) [Caenorhabditis elegans] 0.0
blast T25624 hypothetical protein C44C3.3 - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503799.2 6 36-58,68-87,157-179,221-243,270-292,307-329
H27D07.4 6 36-58,68-87,157-179,221-243,270-292,307-329
Sequence
Target Sequence 
>C. ELEGANS:189013_AT
tcgaaacttcgtttcaagtcctccaagactattcccggcggtgttcaacgtggctttgct
ttctcatcgcgcttattcgaacactagtcatcagaaatcctctgaaccaaagctaccaga
aattagccggtcctgccctctctggttttgcaattctcggaatattatttttgagtcttc
cgatttcagtggtcttttctctggaatatgaactaatgaaaagttctgtgccatcatttt
gtaattcaactgaaacaacttactacacagttatatctgatatgtttgcggataatgatg
ggtattatttgaaaatattttcaattgttaacgggctcgtttcaaatataattccctgcg
tgctcttcccgatagtaactttcctattggtcgtcgagctctggaaatcggataaaaagc
gaaaaaatctttcttccactgcaaatgtaaatgactctagaaaaactactagactggtat
tctacatatctattacgttttttatcgccgaatttccgcttggaataacattgggtgcaa
cttggttttttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAACTTCGTTTCAAGTCCTCCA 344 545 347 Antisense
TCAAGTCCTCCAAGACTATTCCCGG 3 633 360 Antisense
CTATTCCCGGCGGTGTTCAACGTGG 611 221 375 Antisense
CAACTTACTACACAGTTATATCTGA 435 185 602 Antisense
TATTTTCAATTGTTAACGGGCTCGT 7 659 662 Antisense
TAACGGGCTCGTTTCAAATATAATT 701 609 675 Antisense
TCAAATATAATTCCCTGCGTGCTCT 288 629 688 Antisense
CTCTTCCCGATAGTAACTTTCCTAT 109 229 709 Antisense
GATAGTAACTTTCCTATTGGTCGTC 202 425 717 Antisense
AAATCTTTCTTCCACTGCAAATGTA 451 117 771 Antisense
CATTGGGTGCAACTTGGTTTTTTCT 23 217 875 Antisense
Sequence Source Affymetrix Proprietary Database