[Home] | [Total List]

[189011_at]

Description D1065.2 /REP_DB=WormBase Gene ID /WP=CE25833 /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor (ST.LOUIS) TR:O16194 protein_id:AAG24024.1
Cluster 6grp_total > 05      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 52.7
(3)
M 		30.9
(-3)
A 		40.6
(-0.3)
A 		49.7
(2.2)
A 		22
B 50
(3)
A 		39
(1.4)
A 		8.1
(-3)
A 		22.8
(-0.9)
A 		42
C 49.1
(-1.7)
A 		43.6
(-2.4)
A 		39.5
(-3)
A 		82.7
(3)
P 		43
avr 50.6
(2.7) 		37.8
(-0.7) 		29.4
(-3) 		51.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 73.7
(3)
A 		42
(-0.4)
A 		46.5
(0.1)
A 		38.2
(-0.8)
A 		56.8
(1.2)
A 		17.7
(-3)
A 		56
B 38.7
(0.9)
A 		43.4
(1.7)
A 		31.4
(-0.5)
A 		42.3
(1.5)
A 		50.2
(3)
A 		17.6
(-3)
A 		33
C 34
(0.5)
A 		52.3
(3)
A 		7.7
(-3)
A 		10.4
(-2.6)
A 		16.4
(-1.8)
A 		28.5
(-0.2)
A 		45
avr 48.8
(3) 		45.9
(2.4) 		28.5
(-1.4) 		30.3
(-1) 		41.1
(1.3) 		21.3
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 19.2
(3)
M 		6.7
(-3)
A 		10.6
(-1.1)
A 		7.3
(-2.7)
A 		13
B 15.9
(3)
A 		9.6
(0.3)
A 		1.9
(-3)
A 		4.9
(-1.7)
A 		14
C 16.2
(3)
A 		12.5
(-3)
A 		13.8
(-0.9)
A 		14
(-0.6)
P 		4
avr 17.1
(3) 		9.6
(-2.4) 		8.8
(-2.9) 		8.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 13.6
(1.4)
A 		14.9
(2)
A 		10.1
(-0.3)
A 		9.7
(-0.5)
A 		17.1
(3)
A 		4.3
(-3)
A 		13
B 13.5
(0)
A 		14.4
(0.4)
A 		7.6
(-2.6)
A 		11.2
(-1)
A 		20.4
(3)
A 		6.6
(-3)
A 		14
C 12.6
(1.5)
A 		16
(3)
A 		2
(-3)
A 		2.1
(-3)
A 		5.3
(-1.6)
A 		9.5
(0.2)
A 		14
avr 13.2
(1.7) 		15.1
(3) 		6.6
(-3) 		7.7
(-2.2) 		14.3
(2.4) 		6.8
(-2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15837
Sequence Type Exemplar sequence
Representative Public ID D1065.2 NCBI
Target Description D1065.2 /REP_DB=WormBase Gene ID /WP=CE25833 /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor (ST.LOUIS) TR:O16194 protein_id:AAG24024.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
D1065.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:4062310:4068386:1 gene:D1065.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024538 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4062309-4068386(+) 99.3 100.0
Public Domain and Genome References
Ensembl D1065.2
Sequence
Target Sequence 
>C. ELEGANS:189011_AT
tatccacaatttatcatccccgaacaagagagtgtgcgtcaaatttcttgggagatgctt
gattgcattccggagcttccaaccgacgggccagaaccttttatattatccgttgaaaaa
actcctcttgcaatatcgatatccattgcggaaggcgtcccatgcctccagtgcgcaatt
ttcttttttctgaacgtttaccatttaaagatgtttgctagaccaactggaatttctcga
aaaacagttcaaatgcagcataagcttgtgatagcattaattatacagtcttctgttacc
gtcgtactatttcttgcaccagttaacgccattattgcctttgtactggttcattatcaa
aatcaatcctacaacaatttattaacgtttgccctggcaatacatggaatcgcttctact
cttattatgatatttgctcataagccatatcgggattttgcattttcatcagtttgctgc
ctttctagaaaaccaatttcggtaactgttcggccgtcaaatattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCACAATTTATCATCCCCGAAC 470 657 451 Antisense
TGCTTGATTGCATTCCGGAGCTTCC 530 579 506 Antisense
GGGCCAGAACCTTTTATATTATCCG 298 493 538 Antisense
AACTCCTCTTGCAATATCGATATCC 558 141 570 Antisense
TATCCATTGCGGAAGGCGTCCCATG 168 649 590 Antisense
CTGTTACCGTCGTACTATTTCTTGC 448 219 743 Antisense
ATTTCTTGCACCAGTTAACGCCATT 622 13 759 Antisense
TAACGCCATTATTGCCTTTGTACTG 263 639 774 Antisense
TGGAATCGCTTCTACTCTTATTATG 165 547 855 Antisense
TTTTCATCAGTTTGCTGCCTTTCTA 255 677 913 Antisense
GTAACTGTTCGGCCGTCAAATATTC 494 461 952 Antisense
Sequence Source Affymetrix Proprietary Database