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[189010_s_at] M0V-34 protein

Description D2013.7 /REP_DB=WormBase Gene ID /WP=CE00932 /TR=Q18967 /GB=CAA87773.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=M0V-34 protein
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 57      6grp_total > 09      4grp_total > 09      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1567
1 2 3 4 range
A 3624.5
(-0.8)
P 		3236.2
(-3)
P 		3654.5
(-0.6)
P 		4291.6
(3)
P 		1055
B 3150.9
(-3)
P 		3656
(-1.1)
P 		3571.8
(-1.4)
P 		4717.9
(3)
P 		1567
C 3603.2
(-1.7)
P 		4023.4
(3)
P 		3488.2
(-3)
P 		3884.5
(1.4)
P 		535
avr 3459.5
(-3) 		3638.5
(-1.7) 		3571.5
(-2.2) 		4298
(3) 		839

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2158
1 2 3 4 5 6 range
A 2667.7
(-0.1)
P 		2766.2
(0.5)
P 		2144.1
(-3)
P 		3071.4
(2.2)
P 		2353.7
(-1.8)
P 		3211.6
(3)
P 		1068
B 2409.1
(1.6)
P 		2363.6
(1.2)
P 		1852.8
(-3)
P 		2574.2
(3)
P 		2432.2
(1.8)
P 		1968.4
(-2)
P 		721
C 4010.8
(3)
P 		2275.4
(-1.9)
P 		2927.7
(-0)
P 		2763.7
(-0.5)
P 		2753.2
(-0.5)
P 		1865.7
(-3)
P 		2145
avr 3029.2
(3) 		2468.4
(-1.7) 		2308.2
(-3) 		2803.1
(1.1) 		2513
(-1.3) 		2348.6
(-2.7) 		721
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 1319.7
(3)
P 		702.5
(-2.4)
P 		955.4
(-0.2)
P 		628.2
(-3)
P 		692
B 1004.8
(3)
P 		903
(-0.5)
P 		827.7
(-3)
P 		1005.4
(3)
P 		178
C 1192.8
(2.8)
P 		1156.8
(2.4)
P 		1215.7
(3)
P 		655
(-3)
P 		561
avr 1172.4
(3) 		920.8
(-0.7) 		999.6
(0.5) 		762.9
(-3) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1037
1 2 3 4 5 6 range
A 491.8
(-2.7)
P 		983.8
(3)
P 		466.9
(-3)
P 		779
(0.6)
P 		710.2
(-0.2)
P 		781.9
(0.7)
P 		517
B 838.3
(1.3)
P 		786.8
(0.8)
P 		449.9
(-3)
P 		681.8
(-0.4)
P 		988.2
(3)
P 		734
(0.2)
P 		538
C 1486.6
(3)
P 		694.3
(-2.1)
P 		745.2
(-1.8)
P 		555.8
(-3)
P 		890.9
(-0.8)
P 		624.6
(-2.6)
P 		931
avr 938.9
(3) 		821.6
(1.2) 		554
(-3) 		672.2
(-1.2) 		863.1
(1.8) 		713.5
(-0.5) 		385
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189010_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3048
Sequence Type Exemplar sequence
Representative Public ID D2013.7 NCBI
Target Description D2013.7 /REP_DB=WormBase Gene ID /WP=CE00932 /TR=Q18967 /GB=CAA87773.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=M0V-34 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063587 NCBI Caenorhabditis elegans Eukaryotic Initiation Factor family member (eif-3.F) (eif-3.F) mRNA, complete cds. 11/11 None
SNAP00000019828 ENSEMBL cdna:SNAP chromosome:CEL140:II:9331574:9333528:1 11/11 None
GENEFINDER00000019831 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9331574:9333528:1 11/11 None
D2013.7 ENSEMBL cdna:known chromosome:CEL140:II:9331555:9333837:1 gene:D2013.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9331570-9333525(+) 100.0 100.0
Public Domain and Genome References
Gene Title M0V-34 protein
Gene Symbol eif-3.F
Ensembl D2013.7
Entrez Gene 174478 Entrez gene
SwissProt Q18967 EMBL-EBI
WormBase CE00932 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15593_S_AT eukaryotic translation initiation factor 3 subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) at
ATH1-121501:267338_AT eukaryotic translation initiation factor 3 subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) at
CANINE:1584166_S_AT similar to eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa cfa
CANINE_2:CFA.5123.1.A1_AT similar to eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa cfa
CANINE_2:CFA.5123.1.A1_S_AT similar to eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa cfa
CANINE_2:CFAAFFX.11227.1.S1_AT similar to eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa cfa
DROSOPHILA_2:1632103_AT dm
DROSGENOME1:149290_AT dm
CHICKEN:GGA.1526.1.S1_AT similar to eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD); eIF3-epsilon gga
MG-U74BV2:164444_R_AT eukaryotic translation initiation factor 3, subunit 5 (epsilon) mm
MOE430A:1452285_A_AT eukaryotic translation initiation factor 3, subunit 5 (epsilon) mm
MOUSE430A_2:1452285_A_AT eukaryotic translation initiation factor 3, subunit 5 (epsilon) mm
MOUSE430_2:1452285_A_AT eukaryotic translation initiation factor 3, subunit 5 (epsilon) mm
MG-U74AV2:160541_AT Eukaryotic translation initiation factor 3, subunit 5 (epsilon) (Eif3s5), mRNA mm
MU19KSUBA:TC22578_AT Eukaryotic translation initiation factor 3, subunit 5 (epsilon) (Eif3s5), mRNA mm
MU19KSUBA:TC22579_I_AT Eukaryotic translation initiation factor 3, subunit 5 (epsilon) (Eif3s5), mRNA mm
MU19KSUBA:TC22579_S_AT Eukaryotic translation initiation factor 3, subunit 5 (epsilon) (Eif3s5), mRNA mm
MU19KSUBB:TC31414_AT Eukaryotic translation initiation factor 3, subunit 5 (epsilon) (Eif3s5), mRNA mm
MU19KSUBB:TC31415_AT Eukaryotic translation initiation factor 3, subunit 5 (epsilon) (Eif3s5), mRNA mm
RG-U34C:RC_AA818026_AT eukaryotic translation initiation factor 3, subunit 5 (epsilon) (predicted) rn
RAE230A:1373040_AT eukaryotic translation initiation factor 3, subunit 5 (epsilon) (predicted) rn
RAT230_2:1373040_AT eukaryotic translation initiation factor 3, subunit 5 (epsilon) (predicted) rn
RG-U34C:RC_AI169396_AT Eukaryotic translation initiation factor 3, subunit 5 (epsilon) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA87773 Hypothetical protein D2013.7 [Caenorhabditis elegans] ref|NP_495988.1| Eukaryotic Initiation Factor family member (eif-3.F) [Caenorhabditis elegans] 1.0E-166
blast CAE72908 Hypothetical protein CBG20226 [Caenorhabditis briggsae] 6.0E-91
blast NP_079620 eukaryotic translation initiation factor 3, subunit 5 (epsilon) [Mus musculus] dbj|BAB22352.1| unnamed protein product [Mus musculus] sp|Q9DCH4|IF35_MOUSE Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) 8.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR000555 EMBL-EBI Peptidase M67, Mov34 1.0E-35
Sequence
Target Sequence 
>C. ELEGANS:189010_S_AT
tacttcttcgtgtctcatctatcacgactactatgtacgtgtcatcactgaagcatcggc
tcgtcgtgaatctccaccaattgtcgttttgacaattgacacgactttctctggagatat
gtcaaagcgtatgccagttcgtgcctatcttcgctcaaaagccggaattcctggagctgc
tggaccacactgtgctattttcaacccacttcgtgtcgaattagctgcattcccgggaga
actggttgctatgcaacttatcgaaaaagctttggattccagaagaagagaggcaactct
tgaaagtggattggagcaattggagacgagcacagctcagatgattgagtggttggagag
aatgttgcattacgtggaagatgttaacaagaacggtgagaagccaggagatgctcaaat
cggtcgtcaactcatggatattgtcactgcctcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTCTTCGTGTCTCATCTATCAC 539 645 312 Antisense
TGAAGCATCGGCTCGTCGTGAATCT 227 575 360 Antisense
GAATCTCCACCAATTGTCGTTTTGA 57 329 379 Antisense
GACAATTGACACGACTTTCTCTGGA 312 363 402 Antisense
GTCAAAGCGTATGCCAGTTCGTGCC 452 463 432 Antisense
TGCCTATCTTCGCTCAAAAGCCGGA 209 585 453 Antisense
AAAAGCCGGAATTCCTGGAGCTGCT 387 131 468 Antisense
GGACCACACTGTGCTATTTTCAACC 100 523 493 Antisense
ATTTTCAACCCACTTCGTGTCGAAT 437 15 508 Antisense
GATGCTCAAATCGGTCGTCAACTCA 270 413 721 Antisense
CTCATGGATATTGTCACTGCCTCGT 201 229 742 Antisense
Sequence Source Affymetrix Proprietary Database