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[189009_s_at] ABC transpoter

Description F18E2.2 /REP_DB=WormBase Gene ID /WP=CE05663 /TR=Q19554 /GB=CAA99835.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ABC transpoter
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 55      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 75      6grp_total > 46      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 630
1 2 3 4 range
A 1213.7
(3)
P 		711.8
(-2.8)
P 		1159.9
(2.4)
P 		693.1
(-3)
P 		521
B 1126.2
(0.9)
P 		1019
(-0.3)
P 		1323.2
(3)
P 		761.6
(-3)
P 		562
C 1219.1
(3)
P 		737.3
(-3)
P 		990.9
(0.2)
P 		811.5
(-2.1)
P 		482
avr 1186.3
(3) 		822.7
(-2.1) 		1158
(2.6) 		755.4
(-3) 		431

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 525
1 2 3 4 5 6 range
A 960.1
(2.3)
P 		929
(1.8)
P 		1001.9
(3)
P 		980
(2.7)
P 		625.2
(-3)
P 		960.8
(2.3)
P 		377
B 936.8
(1.3)
P 		897.1
(0.7)
P 		875.2
(0.4)
P 		715.9
(-1.9)
P 		643.5
(-3)
P 		1051.9
(3)
P 		408
C 873.8
(0.3)
P 		955.7
(1.3)
P 		980.2
(1.5)
P 		1002.1
(1.8)
P 		583.3
(-3)
P 		1108.6
(3)
P 		525
avr 923.6
(1.3) 		927.3
(1.4) 		952.4
(1.8) 		899.3
(1) 		617.3
(-3) 		1040.4
(3) 		423
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 441.9
(3)
P 		154.5
(-2.1)
P 		303.2
(0.6)
P 		101.5
(-3)
P 		340
B 359.1
(3)
P 		251.7
(-0.3)
P 		306.6
(1.4)
P 		162.3
(-3)
P 		197
C 403.5
(3)
P 		212
(-1.3)
P 		345.3
(1.7)
P 		136.8
(-3)
P 		267
avr 401.5
(3) 		206.1
(-1.4) 		318.4
(1.1) 		133.5
(-3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 177
(-3)
P 		330.4
(3)
P 		218.2
(-1.4)
P 		248.5
(-0.2)
P 		188.6
(-2.5)
P 		233.9
(-0.8)
P 		153
B 326
(1)
P 		298.6
(0.2)
P 		212.5
(-2.3)
P 		189.6
(-3)
P 		261.5
(-0.9)
P 		392.2
(3)
P 		203
C 323.9
(1.4)
P 		291.6
(0.4)
P 		249.5
(-1)
P 		201.5
(-2.6)
P 		188.7
(-3)
P 		371.1
(3)
P 		182
avr 275.6
(0.1) 		306.9
(1.7) 		226.7
(-2.3) 		213.2
(-3) 		212.9
(-3) 		332.4
(3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189009_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13031
Sequence Type Exemplar sequence
Representative Public ID F18E2.2 NCBI
Target Description F18E2.2 /REP_DB=WormBase Gene ID /WP=CE05663 /TR=Q19554 /GB=CAA99835.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ABC transpoter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073791 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-167) (tag-167) mRNA, complete cds. 11/11 None
SNAP00000032113 ENSEMBL cdna:SNAP chromosome:CEL140:V:12763778:12765950:-1 11/11 None
GENEFINDER00000032117 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12763778:12765950:-1 11/11 None
F18E2.2.1 ENSEMBL cdna:known chromosome:CEL140:V:12763646:12765965:-1 gene:F18E2.2 11/11 None
F18E2.2.2 ENSEMBL cdna:known chromosome:CEL140:V:12763649:12765967:-1 gene:F18E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12763777-12765950(-) 100.0 100.0
Public Domain and Genome References
Gene Title ABC transpoter
Gene Symbol tag-167
Ensembl F18E2.2
Entrez Gene 179748 Entrez gene
SwissProt Q19554 EMBL-EBI
WormBase CE05663 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251845_AT ABC transporter family protein at
CANINE:1591463_AT similar to ATP-binding cassette, sub-family F, member 1 (ATP-binding cassette 50) (TNF-alpha stimulated ABC protein) cfa
CANINE:1584067_S_AT similar to ATP-binding cassette, sub-family F, member 1 (ATP-binding cassette 50) (TNF-alpha stimulated ABC protein) cfa
CANINE_2:CFA.12068.1.A1_AT similar to ATP-binding cassette, sub-family F, member 1 (ATP-binding cassette 50) (TNF-alpha stimulated ABC protein) cfa
CANINE_2:CFA.21203.1.S1_S_AT similar to ATP-binding cassette, sub-family F, member 1 (ATP-binding cassette 50) (TNF-alpha stimulated ABC protein) cfa
CANINE_2:CFAAFFX.1556.1.S1_AT similar to ATP-binding cassette, sub-family F, member 1 (ATP-binding cassette 50) (TNF-alpha stimulated ABC protein) cfa
CANINE_2:CFAAFFX.1556.1.S1_S_AT similar to ATP-binding cassette, sub-family F, member 1 (ATP-binding cassette 50) (TNF-alpha stimulated ABC protein) cfa
DROSOPHILA_2:1637887_AT dm
DROSGENOME1:154709_AT dm
PLASMODIUM_ANOPHELES:200045_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
HG-U133A:200045_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
HG-U133B:200045_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
HG-U133_PLUS_2:200045_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
HG-FOCUS:200045_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
HG-U133A_2:200045_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
U133_X3P:200045_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
HU35KSUBA:RC_AA237011_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
U133_X3P:G10947134_3P_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
HG-U95AV2:39141_AT ATP-binding cassette, sub-family F (GCN20), member 1 hs
MG-U74AV2:97330_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MU11KSUBA:AA199380_S_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MU11KSUBB:MSA.19851.0_S_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MG-U74BV2:114264_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MG-U74CV2:170555_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOE430A:1452429_S_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430A_2:1452429_S_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430_2:1452429_S_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOE430A:1427444_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430A_2:1427444_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430_2:1427444_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOE430A:1426921_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430A_2:1426921_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430_2:1426921_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOE430A:1452236_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430A_2:1452236_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430_2:1452236_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOE430A:1420157_S_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430A_2:1420157_S_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOUSE430_2:1420157_S_AT ATP-binding cassette, sub-family F (GCN20), member 1 mm
MOE430A:1420158_S_AT ATP-binding cassette, sub-family F (GCN20), member 1, mRNA (cDNA clone IMAGE:3588242) mm
MOUSE430A_2:1420158_S_AT ATP-binding cassette, sub-family F (GCN20), member 1, mRNA (cDNA clone IMAGE:3588242) mm
MOUSE430_2:1420158_S_AT ATP-binding cassette, sub-family F (GCN20), member 1, mRNA (cDNA clone IMAGE:3588242) mm
MU19KSUBB:TC32544_AT ATP-binding cassette, sub-family F (GCN20), member 1, mRNA (cDNA clone IMAGE:3588242) mm
MU19KSUBC:TC37638_AT ATP-binding cassette, sub-family F (GCN20), member 1, mRNA (cDNA clone IMAGE:3588242) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99835 Hypothetical protein F18E2.2 [Caenorhabditis elegans] ref|NP_506192.1| Temporarily Assigned Gene name family member (tag-167) [Caenorhabditis elegans] 0.0
blast CAE63990 Hypothetical protein CBG08583 [Caenorhabditis briggsae] 0.0
blast EAA00265 ENSANGP00000016545 [Anopheles gambiae str. PEST] ref|XP_320293.2| ENSANGP00000016545 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003439 EMBL-EBI ABC transporter 1.3E-28
Pfam IPR003439 EMBL-EBI ABC transporter 3.3E-42
Sequence
Target Sequence 
>C. ELEGANS:189009_S_AT
ggacatggactcacgtattgctatcgttggaccaaatggagttggaaagtcaacactact
gaaattgttgattggaaaaattgatcctaatgatggtgaactaagaaagcatcgaactct
tcgaatcggatggttcgatcagcacgctaatgaagctctcaatggcgagcagacacccgt
cgaatttttgtgtaccaaattcaacattgactatcaagaagctcgtaaacagctcggaac
tactggacttgctgctcatgctcacactgttaaaattaaagatctttctggaggacaaaa
gtcgagagtagcgttgtgcaacttggctcttggaggtcctgatattatcattcttgatga
acctaccaataatctcgatattgaatccattgatgctctggcagaagcaatccgggattt
caatggtggtgttgtgatggttactcacgacgagcgactggttgttcgaacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACATGGACTCACGTATTGCTATC 595 525 1293 Antisense
GATGGTTCGATCAGCACGCTAATGA 11 409 1421 Antisense
CTCTCAATGGCGAGCAGACACCCGT 158 229 1448 Antisense
AGCAGACACCCGTCGAATTTTTGTG 315 73 1460 Antisense
AGCTCGGAACTACTGGACTTGCTGC 596 79 1523 Antisense
CTGCTCATGCTCACACTGTTAAAAT 217 237 1544 Antisense
GTAGCGTTGTGCAACTTGGCTCTTG 575 457 1600 Antisense
TTGAATCCATTGATGCTCTGGCAGA 434 703 1673 Antisense
GCAATCCGGGATTTCAATGGTGGTG 498 321 1699 Antisense
GATGGTTACTCACGACGAGCGACTG 675 407 1728 Antisense
GACGAGCGACTGGTTGTTCGAACGG 483 379 1741 Antisense
Sequence Source Affymetrix Proprietary Database