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[189005_at] 7TM chemoreceptor, str family

Description T08B6.8 /REP_DB=WormBase Gene ID /WP=CE17229 /TR=O44526 /GB=AAB94159.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 30      4grp_total > 02      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 6.9
(-3)
A 		7.5
(-2.9)
A 		18
(-0.2)
A 		30.9
(3)
A 		24
B 3.7
(-2.5)
A 		13.8
(0.6)
A 		2.2
(-3)
A 		21.4
(3)
A 		19
C 16.7
(-2.2)
A 		4.7
(-3)
A 		17.3
(-2.2)
A 		96.7
(3)
P 		92
avr 9.1
(-2.9) 		8.7
(-3) 		12.5
(-2.4) 		49.7
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 10.7
(-1.4)
A 		9.4
(-1.6)
A 		34.3
(3)
A 		2.1
(-3)
A 		21.2
(0.6)
A 		11.5
(-1.2)
A 		32
B 8.7
(-1.3)
A 		17.8
(0.8)
A 		6.7
(-1.7)
A 		27.4
(3)
A 		1.9
(-2.8)
A 		1
(-3)
A 		26
C 7.1
(-2.4)
A 		35.2
(2.9)
A 		25.5
(1)
A 		36
(3)
A 		14.2
(-1)
A 		3.7
(-3)
A 		32
avr 8.8
(-1.8) 		20.8
(2.5) 		22.2
(3) 		21.8
(2.9) 		12.4
(-0.5) 		5.4
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.5
(-1.3)
A 		1.6
(-3)
A 		4.7
(3)
A 		4.5
(2.6)
A 		3
B 1.2
(-2)
A 		3.4
(1.2)
A 		0.5
(-3)
A 		4.6
(3)
A 		4
C 5.5
(-1.3)
A 		1.3
(-3)
A 		6
(-1.1)
A 		16.3
(3)
P 		15
avr 3.1
(-2.1) 		2.1
(-3) 		3.7
(-1.5) 		8.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2
(-1.7)
A 		3.3
(-0.6)
A 		7.5
(3)
A 		0.5
(-3)
A 		6.4
(2.1)
A 		2.8
(-1)
A 		7
B 3
(-0.7)
A 		5.9
(1.9)
A 		1.6
(-1.9)
A 		7.2
(3)
A 		0.8
(-2.6)
A 		0.4
(-3)
A 		7
C 2.6
(-2.1)
A 		10.7
(3)
A 		6.5
(0.3)
A 		7.2
(0.8)
A 		4.6
(-0.9)
A 		1.2
(-3)
A 		10
avr 2.5
(-1.8) 		6.6
(3) 		5.2
(1.4) 		5
(1.1) 		3.9
(-0.2) 		1.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10970
Sequence Type Exemplar sequence
Representative Public ID T08B6.8 NCBI
Target Description T08B6.8 /REP_DB=WormBase Gene ID /WP=CE17229 /TR=O44526 /GB=AAB94159.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068270 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-159) (str-159) mRNA, complete cds. 11/11 None
T08B6.8 ENSEMBL cdna:known chromosome:CEL140:IV:4909329:4909808:1 gene:T08B6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4909334-4909814(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-159
Ensembl T08B6.8
Entrez Gene 189423 Entrez gene
WormBase CE38254 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 0.0
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 1.0E-95
blast AAC48250 Seven tm receptor protein 160 [Caenorhabditis elegans] ref|NP_503493.1| Seven TM Receptor family member (str-160) [Caenorhabditis elegans] 8.0E-88
blast T15072 hypothetical protein T08B6.8 - Caenorhabditis elegans 1.0E-64
blast NP_500671 Seven TM Receptor family member (str-159) [Caenorhabditis elegans] 3.0E-63
blast NP_500668 Seven TM Receptor family member (str-161) [Caenorhabditis elegans] gb|AAB94157.1| Seven tm receptor protein 161 [Caenorhabditis elegans] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500671.2 7 15-32,45-67,91-113,133-155,205-224,252-274,284-306
T08B6.8 3 15-32,45-67,93-115
Sequence
Target Sequence 
>C. ELEGANS:189005_AT
gattcttgtacacttattgctattctaacaaactctcttctcatctacctagctctcaca
aaatcaccaccaaaaatgggaaattacaaatatttattgtgttatttttctgtgctttca
ataacctatgtaacactggatttccttgcggcaccgtatgtgtatacgtttgaagctagt
agtgtactacttatggatttgaggaataccatttttactgaataccctgcagttgcgttt
ttaataattgtttctgcatgtgggtgttttggagcaacactggcagcaattgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTTGTACACTTATTGCTATTC 35 431 49 Antisense
TATTCTAACAAACTCTCTTCTCATC 11 665 69 Antisense
TCATCTACCTAGCTCTCACAAAATC 517 621 89 Antisense
TATTGTGTTATTTTTCTGTGCTTTC 74 667 143 Antisense
TTCTGTGCTTTCAATAACCTATGTA 589 693 156 Antisense
GTAACACTGGATTTCCTTGCGGCAC 50 463 178 Antisense
ATTTCCTTGCGGCACCGTATGTGTA 475 17 188 Antisense
ATACCATTTTTACTGAATACCCTGC 377 23 254 Antisense
TGAATACCCTGCAGTTGCGTTTTTA 123 575 267 Antisense
TGTTTCTGCATGTGGGTGTTTTGGA 264 561 297 Antisense
TGGAGCAACACTGGCAGCAATTGCA 185 549 318 Antisense
Sequence Source Affymetrix Proprietary Database