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[189001_s_at] ankyrin motif

Description K02B12.5 /REP_DB=WormBase Gene ID /WP=CE17993 /TR=Q21117 /GB=CAB00035.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ankyrin motif
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 95      4grp_high_8_8 > 11      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 13      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 234.2
(2.7)
P 		171.1
(-2)
P 		157
(-3)
P 		238.7
(3)
P 		82
B 234.5
(3)
P 		163.5
(-2.5)
P 		157.5
(-3)
P 		229.7
(2.6)
P 		77
C 181.6
(-1.9)
P 		155.9
(-2.6)
A 		139.4
(-3)
P 		368.2
(3)
P 		229
avr 216.8
(0.1) 		163.5
(-2.4) 		151.3
(-3) 		278.9
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 151.3
(-3)
P 		224.2
(-0.2)
P 		171.2
(-2.2)
P 		305.7
(3)
P 		252
(0.9)
P 		291.8
(2.5)
P 		154
B 222
(1.3)
P 		182.1
(-3)
P 		238.1
(3)
P 		192.9
(-1.8)
P 		237.7
(3)
P 		196
(-1.5)
P 		56
C 195.8
(-3)
P 		219
(-2.3)
P 		274.7
(-0.6)
P 		221.1
(-2.2)
P 		210.6
(-2.5)
P 		391.7
(3)
P 		196
avr 189.7
(-3) 		208.4
(-1.9) 		228
(-0.8) 		239.9
(-0.1) 		233.4
(-0.5) 		293.2
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 85.3
(3)
P 		37.1
(-2.7)
P 		41
(-2.3)
P 		34.9
(-3)
P 		50
B 74.8
(3)
P 		40.4
(-2.4)
P 		36.5
(-3)
P 		48.9
(-1.1)
P 		38
C 60.1
(2.3)
P 		44.8
(-3)
A 		48.6
(-1.7)
P 		62.1
(3)
P 		17
avr 73.4
(3) 		40.8
(-3) 		42
(-2.8) 		48.6
(-1.6) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 27.9
(-3)
P 		79.7
(3)
P 		37.3
(-1.9)
P 		77.5
(2.7)
P 		76
(2.6)
P 		71
(2)
P 		52
B 77.2
(0.4)
P 		60.6
(-1.7)
P 		57.8
(-2.1)
P 		51.1
(-3)
P 		96.6
(3)
P 		73.1
(-0.1)
P 		46
C 72.6
(-1.1)
P 		66.8
(-1.5)
P 		69.9
(-1.2)
P 		44.5
(-3)
P 		68.1
(-1.4)
P 		131.1
(3)
P 		87
avr 59.2
(-2.3) 		69
(-0.7) 		55
(-3) 		57.7
(-2.6) 		80.2
(1.1) 		91.7
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189001_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1735
Sequence Type Exemplar sequence
Representative Public ID K02B12.5 NCBI
Target Description K02B12.5 /REP_DB=WormBase Gene ID /WP=CE17993 /TR=Q21117 /GB=CAB00035.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ankyrin motif
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059907 NCBI Caenorhabditis elegans K02B12.5 (K02B12.5) mRNA, complete cds. 11/11 None
K02B12.5 ENSEMBL cdna:known chromosome:CEL140:I:8525606:8534746:-1 gene:K02B12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001145 3/11 Cross Hyb Matching Probes None
GENEFINDER00000001155 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8525589-8534893(-) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin motif
Ensembl K02B12.5
Entrez Gene 172642 Entrez gene
SwissProt Q21117 EMBL-EBI
WormBase CE34911 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00035 Hypothetical protein K02B12.5 [Caenorhabditis elegans] ref|NP_492308.2| K02B12.5 [Caenorhabditis elegans] 0.0
blast CAE67111 Hypothetical protein CBG12525 [Caenorhabditis briggsae] 0.0
blast XP_694699 PREDICTED: similar to I-kappa-B-related protein [Danio rerio] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 2.5E-6
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-5
Pfam IPR002110 EMBL-EBI Ankyrin 6.5E-8
Sequence
Target Sequence 
>C. ELEGANS:189001_S_AT
gtaaaatctcaccgttgtactttggttgctcattgtaataagaaccaccatagtatggtt
gatgagatgaatacttcattgattccatttttgaatgtcagataccaaaagcttcaactt
ccacataaacctaagcctctcctaaaaaagctcactattcaatgtatcgactttcgggaa
gaatctcaaatcataaaagttttaaatcaatgttccaatattgaatctttaaatctttct
ggaatacggttgcttgcgaataatacttcgattgatactattatcccatcagtttttata
ggcatgtctcatctcaagaagttggatttgagcttcaactcctcgtggatttccgatcag
atctggattctgatattgggagaattgaagaatttagaggaacttaccataaatgaaacg
aaaacaaaagtggagtttgagtctgattggctttcgcatttgtgctcattttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAAATCTCACCGTTGTACTTTGG 60 461 3010 Antisense
CCGTTGTACTTTGGTTGCTCATTGT 141 265 3021 Antisense
GATACCAAAAGCTTCAACTTCCACA 197 425 3110 Antisense
AAGCCTCTCCTAAAAAAGCTCACTA 341 149 3142 Antisense
AGCTCACTATTCAATGTATCGACTT 530 79 3158 Antisense
ATCTTTCTGGAATACGGTTGCTTGC 519 29 3242 Antisense
GATACTATTATCCCATCAGTTTTTA 479 423 3283 Antisense
AGTTTTTATAGGCATGTCTCATCTC 488 63 3300 Antisense
TCAACTCCTCGTGGATTTCCGATCA 371 631 3344 Antisense
GTTTGAGTCTGATTGGCTTTCGCAT 361 451 3444 Antisense
GCTTTCGCATTTGTGCTCATTTTCT 154 305 3459 Antisense
Sequence Source Affymetrix Proprietary Database