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[189000_at] dehydrogenase

Description T01G6.1 /REP_DB=WormBase Gene ID /WP=CE12990 /TR=O16969 /GB=AAG24176.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 4grp_high_8_8 > 09      6grp_total > 14      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 82.6
(3)
P 		33.2
(-3)
A 		52.1
(-0.7)
P 		70.1
(1.5)
A 		49
B 71.7
(3)
A 		48.8
(1)
A 		11.1
(-2.3)
A 		2.9
(-3)
A 		69
C 62
(1.2)
A 		51.7
(-0.8)
P 		40.5
(-3)
P 		71.2
(3)
P 		31
avr 72.1
(3) 		44.6
(-1.4) 		34.6
(-3) 		48.1
(-0.8) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 121.9
(3)
P 		83.4
(1)
P 		53.5
(-0.5)
P 		41.9
(-1.1)
A 		23
(-2.1)
A 		6.1
(-3)
A 		116
B 125.4
(3)
P 		61.5
(-0.2)
P 		45.7
(-0.9)
A 		18.3
(-2.3)
A 		3.7
(-3)
A 		21.9
(-2.1)
A 		122
C 93.9
(3)
P 		58.6
(0.7)
A 		52
(0.3)
A 		83.3
(2.3)
A 		1.7
(-3)
A 		15.8
(-2.1)
A 		92
avr 113.7
(3) 		67.8
(0.4) 		50.4
(-0.6) 		47.8
(-0.8) 		9.5
(-3) 		14.6
(-2.7) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 30.1
(3)
P 		7.2
(-3)
A 		13.6
(-1.3)
P 		10.3
(-2.2)
A 		23
B 22.9
(3)
A 		12
(0.1)
A 		2.6
(-2.5)
A 		0.6
(-3)
A 		22
C 20.5
(3)
A 		14.9
(-1)
P 		14.1
(-1.5)
P 		12
(-3)
P 		9
avr 24.5
(3) 		11.4
(-1.7) 		10.1
(-2.1) 		7.6
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 22.5
(1.5)
P 		29.7
(3)
P 		11.7
(-0.8)
P 		10.6
(-1.1)
A 		6.9
(-1.9)
A 		1.5
(-3)
A 		28
B 43.6
(3)
P 		20.5
(-0.3)
P 		11.1
(-1.6)
A 		4.9
(-2.5)
A 		1.5
(-3)
A 		8.2
(-2)
A 		42
C 34.8
(3)
P 		17.9
(0)
A 		13.2
(-0.8)
A 		16.8
(-0.2)
A 		0.6
(-3)
A 		5.3
(-2.2)
A 		34
avr 33.6
(3) 		22.7
(0.9) 		12
(-1.2) 		10.8
(-1.5) 		3
(-3) 		5
(-2.6) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15673
Sequence Type Exemplar sequence
Representative Public ID T01G6.1 NCBI
Target Description T01G6.1 /REP_DB=WormBase Gene ID /WP=CE12990 /TR=O16969 /GB=AAG24176.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070821 NCBI Caenorhabditis elegans T01G6.1 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000004003 ENSEMBL cdna:SNAP chromosome:CEL140:V:497668:498772:1 11/11 None
GENEFINDER00000004006 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:497668:498772:1 11/11 None
T01G6.1 ENSEMBL cdna:known chromosome:CEL140:V:497668:498772:1 gene:T01G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:497667-498772(+) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl T01G6.1
Entrez Gene 187961 Entrez gene
SwissProt O16969 EMBL-EBI
WormBase CE12990 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13206_AT alcohol dehydrogenase (ATA1) at
ATH1-121501:252780_AT alcohol dehydrogenase (ATA1) at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24176 Hypothetical protein T01G6.1 [Caenorhabditis elegans] ref|NP_503222.1| T01G6.1 [Caenorhabditis elegans] 1.0E-134
blast AAG24180 Hypothetical protein T01G6.10 [Caenorhabditis elegans] ref|NP_503224.2| T01G6.10 [Caenorhabditis elegans] 1.0E-100
blast CAE74570 Hypothetical protein CBG22334 [Caenorhabditis briggsae] 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.6E-60
Sequence
Target Sequence 
>C. ELEGANS:189000_AT
gtttcgagtatcgctgcgggaccacaagcggtgtcaatgtctccttattatgcagctgca
aaagctgcacttaaccaatacacacgatgtgttgcactggatcttataaaacaaggagtt
cgcgtcaactctgtcagtcctggcatcatcgcaacaaattttatgggggctatgggagtg
cctgagcaggcacagaaaaagattgtgaatcttttcgcttctgaaaaaggatgcatccct
gctggagttccaggaaaaccggaagacattgccgaactcattgtgttcctgtcggatcgt
aagagatccttctatattgtcggacaatcaattgtggcggacggcgggacgtctttgata
tctccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCGAGTATCGCTGCGGGACCAC 216 451 442 Antisense
CCACAAGCGGTGTCAATGTCTCCTT 451 275 463 Antisense
ATGTCTCCTTATTATGCAGCTGCAA 554 47 478 Antisense
AAGCTGCACTTAACCAATACACACG 434 149 503 Antisense
AAGGAGTTCGCGTCAACTCTGTCAG 452 159 554 Antisense
TCAGTCCTGGCATCATCGCAACAAA 492 623 575 Antisense
GGGCTATGGGAGTGCCTGAGCAGGC 631 491 608 Antisense
GATTGTGAATCTTTTCGCTTCTGAA 474 435 642 Antisense
AAAAGGATGCATCCCTGCTGGAGTT 74 133 666 Antisense
AACTCATTGTGTTCCTGTCGGATCG 1 141 716 Antisense
GCGGGACGTCTTTGATATCTCCAAT 286 293 785 Antisense
Sequence Source Affymetrix Proprietary Database