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[188999_s_at] Histone H3

Description F45E1.6 /REP_DB=WormBase Gene ID /WP=CE01943 /TR=SW:Q10453 /GB=AAB04902.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Histone H3
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 22      6grp_total > 32      4grp_total > 05      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2371
1 2 3 4 range
A 2270.5
(-1.2)
P 		1627
(-2.9)
P 		1572.9
(-3)
P 		3878.1
(3)
P 		2305
B 2358.5
(-0.4)
P 		1595.2
(-2.9)
P 		1560.7
(-3)
P 		3399.9
(3)
P 		1839
C 2395.1
(-0.4)
P 		1734.6
(-2.3)
P 		1506.7
(-3)
P 		3533.9
(3)
P 		2027
avr 2341.4
(-0.7) 		1652.3
(-2.7) 		1546.8
(-3) 		3604
(3) 		2057

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1164
1 2 3 4 5 6 range
A 1572.3
(1.6)
P 		1577
(1.6)
P 		1754.7
(3)
P 		1681.7
(2.4)
P 		1310.3
(-0.5)
P 		991.4
(-3)
P 		763
B 1933.2
(1.6)
P 		1552.3
(-0.8)
P 		2155.1
(3)
P 		1720.3
(0.2)
P 		1397.1
(-1.8)
P 		1210.9
(-3)
P 		944
C 1993.4
(3)
P 		1351.7
(-2.8)
P 		1649.2
(-0.1)
P 		1668.1
(0.1)
P 		1630.3
(-0.3)
P 		1326.1
(-3)
P 		667
avr 1833
(2.8) 		1493.7
(-0.2) 		1853
(3) 		1690
(1.6) 		1445.9
(-0.6) 		1176.1
(-3) 		677
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 474
1 2 3 4 range
A 826.7
(3)
P 		353.2
(-3)
P 		411.2
(-2.3)
P 		567.7
(-0.3)
P 		474
B 752.1
(3)
P 		394
(-2.5)
P 		361.6
(-3)
P 		724.5
(2.6)
P 		391
C 792.8
(3)
P 		498.7
(-3)
P 		525.1
(-2.5)
P 		595.9
(-1)
P 		294
avr 790.5
(3) 		415.3
(-3) 		432.6
(-2.7) 		629.4
(0.4) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 289.8
(-2.1)
P 		560.9
(3)
P 		382.1
(-0.4)
P 		426.5
(0.5)
P 		395.4
(-0.1)
P 		241.4
(-3)
P 		320
B 672.6
(3)
P 		516.7
(-1.2)
P 		523.3
(-1.1)
P 		455.6
(-2.9)
P 		567.6
(0.2)
P 		451.5
(-3)
P 		221
C 738.9
(3)
P 		412.4
(-1.9)
P 		419.8
(-1.7)
P 		335.5
(-3)
P 		527.5
(-0.1)
P 		443.9
(-1.4)
P 		403
avr 567.1
(3) 		496.7
(0.8) 		441.7
(-1) 		405.9
(-2.1) 		496.8
(0.8) 		378.9
(-3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188999_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16397
Sequence Type Exemplar sequence
Representative Public ID F45E1.6 NCBI
Target Description F45E1.6 /REP_DB=WormBase Gene ID /WP=CE01943 /TR=SW:Q10453 /GB=AAB04902.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Histone H3
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076943 NCBI Caenorhabditis elegans HIStone family member (his-71) (his-71) mRNA, complete cds. 11/11 None
SNAP00000004147 ENSEMBL cdna:SNAP chromosome:CEL140:X:7981488:7981996:-1 11/11 None
GENEFINDER00000004155 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7981488:7981996:-1 11/11 None
F45E1.6.1 ENSEMBL cdna:known chromosome:CEL140:X:7981324:7982012:-1 gene:F45E1.6 11/11 None
F45E1.6.2 ENSEMBL cdna:known chromosome:CEL140:X:7981328:7982017:-1 gene:F45E1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7981486-7981995(-) 100.0 100.0
Public Domain and Genome References
Gene Title Histone H3
Gene Symbol his-71
Ensembl F45E1.6
Entrez Gene 181057 Entrez gene
WormBase CE01943 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.7894.1.S1_S_AT similar to H3 histone, family 3B cfa
DROSOPHILA_2:1623222_S_AT Histone H3.3B dm
DROSGENOME1:142668_AT Histone H3.3B dm
CHICKEN:GGA.4770.1.S1_AT H3 histone, family 3B (H3.3B) gga
HG-U133_PLUS_2:211997_X_AT H3 histone, family 3B (H3.3B) hs
HG-U133A_2:211997_X_AT H3 histone, family 3B (H3.3B) hs
HG-U133A:211997_X_AT H3 histone, family 3B (H3.3B) hs
HG-U133_PLUS_2:211998_AT H3 histone, family 3B (H3.3B) hs
HG-U133A_2:211998_AT H3 histone, family 3B (H3.3B) hs
HG-U133A:211998_AT H3 histone, family 3B (H3.3B) hs
HG-U133_PLUS_2:211999_AT H3 histone, family 3B (H3.3B) hs
HG-U133A_2:211999_AT H3 histone, family 3B (H3.3B) hs
HG-FOCUS:211999_AT H3 histone, family 3B (H3.3B) hs
HG-U133A:211999_AT H3 histone, family 3B (H3.3B) hs
HG-U133_PLUS_2:209069_S_AT H3 histone, family 3B (H3.3B) hs
HG-U133A_2:209069_S_AT H3 histone, family 3B (H3.3B) hs
HG-U133A:209069_S_AT H3 histone, family 3B (H3.3B) hs
HUGENEFL:Z48950_AT H3 histone, family 3B (H3.3B) hs
U133_X3P:G12654576_3P_S_AT H3 histone, family 3B (H3.3B) hs
U133_X3P:HS.180877.1.A4_3P_AT H3 histone, family 3B (H3.3B) hs
U133_X3P:HS.180877.1.A3_3P_AT H3 histone, family 3B (H3.3B) hs
U133_X3P:HS.180877.1.A1_3P_S_AT H3 histone, family 3B (H3.3B) hs
HG-U95AV2:31510_S_AT H3 histone, family 3B (H3.3B) hs
HG-U95D:90048_AT H3 histone, family 3B (H3.3B) hs
HU35KSUBC:RC_N40168_AT H3 histone, family 3B (H3.3B) hs
HG-U95B:45986_AT H3 histone, family 3B (H3.3B) hs
HG-U95D:70062_AT H3 histone, family 3B (H3.3B) hs
HG-U95D:88874_I_AT H3 histone, family 3B (H3.3B) hs
HG-U95D:88877_R_AT H3 histone, family 3B (H3.3B) hs
MOE430A:1420376_A_AT H3 histone, family 3B mm
MOUSE430A_2:1420376_A_AT H3 histone, family 3B mm
MOUSE430_2:1420376_A_AT H3 histone, family 3B mm
MOUSE430_2:1455725_A_AT H3 histone, family 3B mm
MOE430A:1455725_A_AT H3 histone, family 3B mm
MOUSE430A_2:1455725_A_AT H3 histone, family 3B mm
MU11KSUBB:X13605_S_AT H3 histone, family 3B mm
MG-U74AV2:100708_AT H3 histone, family 3B mm
MG-U74BV2:115301_R_AT H3 histone, family 3B mm
MOE430B:1430357_AT H3 histone, family 3B mm
MOUSE430_2:1430357_AT H3 histone, family 3B mm
MU19KSUBA:TC23443_I_AT H3 histone, family 3B mm
MU19KSUBC:TC41710_AT H3 histone, family 3B, mRNA (cDNA clone MGC:47401 IMAGE:4500770) mm
RG-U34A:RC_AI177503_AT H3 histone, family 3B rn
RG-U34B:RC_AI010256_AT H3 histone, family 3B rn
RG-U34C:RC_AI169289_AT H3 histone, family 3B rn
RG-U34C:RC_AI170709_AT H3 histone, family 3B rn
RG-U34C:RC_AI136747_S_AT H3 histone, family 3B rn
RAE230A:1390019_AT H3 histone, family 3B rn
RAT230_2:1390019_AT H3 histone, family 3B rn
RAE230A:1398888_AT H3 histone, family 3B rn
RAT230_2:1398888_AT H3 histone, family 3B rn
RAE230A:1370190_AT H3 histone, family 3B rn
RAT230_2:1370190_AT H3 histone, family 3B rn
RAE230A:1398849_AT H3 histone, family 3B rn
RAT230_2:1398849_AT H3 histone, family 3B rn
RG-U34A:RC_AA875069_AT H3 histone, family 3B rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04902 Histone protein 71 [Caenorhabditis elegans] ref|NP_509344.1| HIStone family member (his-71) [Caenorhabditis elegans] sp|Q10453|H33_CAEEL Histone H3.3 2.0E-70
blast CAE70330 Hypothetical protein CBG16863 [Caenorhabditis briggsae] 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR007125 EMBL-EBI Histone core 2.7E-29
Sequence
Target Sequence 
>C. ELEGANS:188999_S_AT
aagcaaaccgcgcgtaaatcaactggaggaaaagctcctcgcaagcagctggccactaag
gcggctcgcaagtcagctccaactaccggaggtgtcaagaaaccacatcgttatcgtcca
ggaaccgtcgctcttcgtgagattcgtcgttaccaaaagtccaccgagcttctcatccgc
aagcttccattccaacgtcttgttcgtgaaatcgctcaagatttcaagaccgatctccgt
ttccaatccgccgccatcggagctctgcaagaggcttctgaggcctacctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCAAACCGCGCGTAAATCAACTG 580 149 25 Antisense
ACCGCGCGTAAATCAACTGGAGGAA 665 81 31 Antisense
GGAGGAAAAGCTCCTCGCAAGCAGC 583 515 49 Antisense
TCGCAAGCAGCTGGCCACTAAGGCG 322 601 63 Antisense
CAAGCAGCTGGCCACTAAGGCGGCT 620 185 66 Antisense
CAAGTCAGCTCCAACTACCGGAGGT 285 183 93 Antisense
GTCAGCTCCAACTACCGGAGGTGTC 74 467 96 Antisense
GCTCCAACTACCGGAGGTGTCAAGA 580 297 100 Antisense
CGGAGCTCTGCAAGAGGCTTCTGAG 427 243 282 Antisense
AGCTCTGCAAGAGGCTTCTGAGGCC 212 81 285 Antisense
CAAGAGGCTTCTGAGGCCTACCTCG 265 185 292 Antisense
Sequence Source Affymetrix Proprietary Database