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[188997_at] casein kinase

Description F56H11.6 /REP_DB=WormBase Gene ID /WP=CE16145 /TR=Q20906 /GB=CAA92961.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=casein kinase
Cluster 6grp_total > 10      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 14.8
(-0.5)
A 		10.3
(-1.9)
A 		6.6
(-3)
A 		26.6
(3)
A 		20
B 53.4
(3)
A 		10.8
(-3)
A 		43.9
(1.7)
A 		22.3
(-1.4)
A 		43
C 14.6
(-1.7)
A 		7.9
(-2.6)
A 		5
(-3)
A 		49.7
(3)
A 		45
avr 27.6
(1.6) 		9.7
(-3) 		18.5
(-0.7) 		32.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 5.6
(-3)
A 		22.3
(0.8)
A 		21.3
(0.6)
A 		16.7
(-0.5)
A 		31.9
(3)
A 		9.3
(-2.2)
A 		26
B 10
(-2.1)
A 		41.6
(3)
A 		29.7
(1.1)
A 		6.9
(-2.6)
A 		4.7
(-3)
A 		16.2
(-1.1)
A 		37
C 2.4
(-3)
A 		42.2
(3)
A 		5.2
(-2.6)
A 		11
(-1.7)
A 		4.5
(-2.7)
A 		13.4
(-1.3)
A 		40
avr 6
(-3) 		35.4
(3) 		18.7
(-0.4) 		11.5
(-1.9) 		13.7
(-1.4) 		13
(-1.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.4
(3)
A 		2.2
(-2.2)
A 		1.7
(-3)
A 		3.9
(0.6)
A 		4
B 17
(3)
A 		2.7
(-3)
A 		10.2
(0.1)
A 		4.8
(-2.1)
A 		14
C 4.8
(-0.2)
A 		2.3
(-2.5)
A 		1.7
(-3)
A 		8.4
(3)
A 		7
avr 9.1
(3) 		2.4
(-3) 		4.5
(-1.1) 		5.7
(-0) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1
(-3)
A 		7.9
(1.8)
A 		4.6
(-0.5)
A 		4.2
(-0.8)
A 		9.6
(3)
A 		2.3
(-2.1)
A 		9
B 3.5
(-2.2)
A 		13.9
(3)
A 		7.2
(-0.3)
A 		1.8
(-3)
A 		1.9
(-3)
A 		6.1
(-0.9)
A 		12
C 0.9
(-3)
A 		12.9
(3)
A 		1.3
(-2.8)
A 		2.2
(-2.4)
A 		1.4
(-2.8)
A 		4.5
(-1.2)
A 		12
avr 1.8
(-3) 		11.6
(3) 		4.4
(-1.4) 		2.7
(-2.4) 		4.3
(-1.5) 		4.3
(-1.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188997_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9582
Sequence Type Exemplar sequence
Representative Public ID F56H11.6 NCBI
Target Description F56H11.6 /REP_DB=WormBase Gene ID /WP=CE16145 /TR=Q20906 /GB=CAA92961.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=casein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069289 NCBI Caenorhabditis elegans F56H11.6 (F56H11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000040077 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9528332:9529317:-1 10/11 None
F56H11.6 ENSEMBL cdna:known chromosome:CEL140:IV:9528332:9529591:-1 gene:F56H11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040067 8/11 Cross Hyb Matching Probes None
SNAP00000040068 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9528337-9529597(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein kinase
Ensembl F56H11.6
Entrez Gene 186427 Entrez gene
SwissProt Q20906 EMBL-EBI
WormBase CE16145 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92961 Hypothetical protein F56H11.6 [Caenorhabditis elegans] ref|NP_501690.1| F56H11.6 [Caenorhabditis elegans] 1.0E-145
blast CAA92961 Hypothetical protein F56H11.6 [Caenorhabditis elegans] ref|NP_501690.1| F56H11.6 [Caenorhabditis elegans] 1.0E-103
blast CAE59468 Hypothetical protein CBG02852 [Caenorhabditis briggsae] 2.0E-35
blast CAE72771 Hypothetical protein CBG20023 [Caenorhabditis briggsae] 9.0E-35
blast AAB03128 Hypothetical protein C49C8.1 [Caenorhabditis elegans] ref|NP_501483.1| C49C8.1 [Caenorhabditis elegans] 1.0E-23
blast CAE59468 Hypothetical protein CBG02852 [Caenorhabditis briggsae] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:188997_AT
ggattgcgattcagtgcttgtacgagtttaaaacaatgcaccacagtggatttgttcacc
gtggtgttaaggagagcaactttgcagttggtatgaactctctttccgaatatcatagac
gacaaaagaatccttctcacttctcacctgagcaagaggaaaagcttaaagaaattaata
agatgctcaaagaatgtcattattacgatcatccaaactatgatctagtgcattcattct
tcaaagatgtgatgatcaagtcagaagttaattggggttcggcatacgactgggaaacca
acacgaaatcggatgagttgtcgaaagttgtcaaagcaaagaagggaaagaagtatgtgt
gggaaaatcctggagactttttcaagattgataaatgggctcttcttgataaaccaaagc
ttccggctaaacctgcaatgaataagaagccaaagtccaagacaagacgccaggatctga
acaaaaaatccccacattcaggagcagacggattaagtcgagaagattcgatcaatgttg
actcgatgaaaaaagagaaaagtggaggtggcccgagtgtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTGCGATTCAGTGCTTGTACGA 659 507 182 Antisense
GCACCACAGTGGATTTGTTCACCGT 645 313 219 Antisense
GTTGGTATGAACTCTCTTTCCGAAT 619 211 268 Antisense
CAAAAGAATCCTTCTCACTTCTCAC 193 191 304 Antisense
TTCTCACTTCTCACCTGAGCAAGAG 83 693 315 Antisense
GATCTAGTGCATTCATTCTTCAAAG 544 419 403 Antisense
ATTGGGGTTCGGCATACGACTGGGA 652 1 452 Antisense
GATTGATAAATGGGCTCTTCTTGAT 186 435 567 Antisense
AAAGCTTCCGGCTAAACCTGCAATG 515 123 597 Antisense
AAATCCCCACATTCAGGAGCAGACG 403 119 667 Antisense
AAAGTGGAGGTGGCCCGAGTGTGAT 516 119 740 Antisense
Sequence Source Affymetrix Proprietary Database