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[188996_at] transferase

Description H43I07.2 /REP_DB=WormBase Gene ID /WP=CE21008 /TR=Q9UAY9 /GB=AAD14758.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 79      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 94      6grp_total > 79      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 877
1 2 3 4 range
A 609.7
(-3)
P 		799.5
(-0.4)
P 		688.5
(-1.9)
P 		1040.3
(3)
P 		431
B 688
(-2.1)
P 		555.3
(-3)
P 		718
(-1.9)
P 		1432.4
(3)
P 		877
C 631.5
(-3)
P 		788.9
(-1.2)
P 		820
(-0.8)
P 		1150.4
(3)
P 		519
avr 643.1
(-3) 		714.6
(-2.2) 		742.2
(-1.9) 		1207.7
(3) 		565

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 629
1 2 3 4 5 6 range
A 486.4
(-1.3)
P 		495.6
(-1.2)
P 		329.6
(-3)
P 		445
(-1.8)
P 		695.9
(0.9)
P 		896.5
(3)
P 		567
B 502.3
(-2.7)
P 		519.6
(-2.5)
P 		482.6
(-3)
P 		497.3
(-2.8)
P 		762.1
(1.1)
P 		894.5
(3)
P 		412
C 632.3
(-0.9)
P 		557.1
(-1.8)
P 		452.1
(-3)
P 		539.6
(-2)
P 		700.9
(-0.1)
P 		958.2
(3)
P 		506
avr 540.3
(-1.6) 		524.1
(-1.8) 		421.4
(-3) 		494
(-2.1) 		719.6
(0.6) 		916.4
(3) 		495
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 222
(3)
P 		173.6
(-1.2)
P 		180
(-0.6)
P 		152.3
(-3)
P 		70
B 219.4
(-0.1)
P 		137.2
(-3)
P 		166.4
(-2)
P 		305.2
(3)
P 		168
C 209.1
(-2)
P 		226.8
(-0.9)
P 		285.8
(3)
P 		194
(-3)
P 		92
avr 216.8
(2.9) 		179.2
(-3) 		210.7
(2) 		217.2
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 89.7
(-2.3)
P 		176.3
(1.3)
P 		71.8
(-3)
P 		112.9
(-1.3)
P 		210
(2.7)
P 		218.3
(3)
P 		147
B 174.8
(-1.4)
P 		173
(-1.5)
P 		117.2
(-3)
P 		131.7
(-2.6)
P 		309.6
(2.3)
P 		333.6
(3)
P 		216
C 234.4
(0.6)
P 		170
(-1.3)
P 		115.1
(-2.8)
P 		108.5
(-3)
P 		226.8
(0.3)
P 		320.8
(3)
P 		212
avr 166.3
(-0.9) 		173.1
(-0.7) 		101.4
(-3) 		117.7
(-2.5) 		248.8
(1.7) 		290.9
(3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15144
Sequence Type Exemplar sequence
Representative Public ID H43I07.2 NCBI
Target Description H43I07.2 /REP_DB=WormBase Gene ID /WP=CE21008 /TR=Q9UAY9 /GB=AAD14758.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071765(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071765 NCBI Caenorhabditis elegans H43I07.2 (transferase) mRNA, complete cds. 11/11 None
SNAP00000022206 ENSEMBL cdna:SNAP chromosome:CEL140:V:4195575:4208180:1 11/11 None
GENEFINDER00000022210 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4199305:4203373:1 11/11 None
H43I07.2 ENSEMBL cdna:known chromosome:CEL140:V:4199299:4203488:1 gene:H43I07.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4195429-4203373(+) 100.0 100.0
Public Domain and Genome References
Gene Title transferase
Ensembl H43I07.2
Entrez Gene 178823 Entrez gene
SwissProt Q9UAY9 EMBL-EBI
WormBase CE29979 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264924_AT DNA-directed RNA polymerase, putative at
ATGENOME1:16653_S_AT DNA-directed RNA polymerase, putative at
CANINE:1592207_AT similar to DNA-directed RNA polymerase I 40 kDa polypeptide (RPA40) (RPA39) cfa
CANINE:1590283_AT similar to DNA-directed RNA polymerase I 40 kDa polypeptide (RPA40) (RPA39) cfa
CANINE_2:CFA.19321.1.S1_AT similar to DNA-directed RNA polymerase I 40 kDa polypeptide (RPA40) (RPA39) cfa
CANINE_2:CFA.7659.1.A1_AT similar to DNA-directed RNA polymerase I 40 kDa polypeptide (RPA40) (RPA39) cfa
CANINE_2:CFAAFFX.3728.1.S1_S_AT similar to DNA-directed RNA polymerase I 40 kDa polypeptide (RPA40) (RPA39) cfa
DROSOPHILA_2:1633967_AT dm
DROSGENOME1:141350_AT dm
CHICKEN:GGA.1059.1.S1_A_AT polymerase (RNA) I polypeptide C, 30kDa gga
HG-U133_PLUS_2:207515_S_AT polymerase (RNA) I polypeptide C, 30kDa hs
HG-U133A:207515_S_AT polymerase (RNA) I polypeptide C, 30kDa hs
HG-FOCUS:207515_S_AT polymerase (RNA) I polypeptide C, 30kDa hs
HG-U133A_2:207515_S_AT polymerase (RNA) I polypeptide C, 30kDa hs
HG-U133A:209317_AT polymerase (RNA) I polypeptide C, 30kDa hs
HG-U133_PLUS_2:209317_AT polymerase (RNA) I polypeptide C, 30kDa hs
HG-U133A_2:209317_AT polymerase (RNA) I polypeptide C, 30kDa hs
HU35KSUBA:AF008442_AT polymerase (RNA) I polypeptide C, 30kDa hs
U133_X3P:G4759045_3P_A_AT polymerase (RNA) I polypeptide C, 30kDa hs
U133_X3P:G2266928_3P_AT polymerase (RNA) I polypeptide C, 30kDa hs
HG-U95AV2:36460_AT polymerase (RNA) I polypeptide C, 30kDa hs
MOE430A:1449648_S_AT RNA polymerase 1-1 mm
MOUSE430A_2:1449648_S_AT RNA polymerase 1-1 mm
MOUSE430_2:1449648_S_AT RNA polymerase 1-1 mm
MG-U74AV2:160426_AT RNA polymerase 1-1 mm
MU11KSUBA:D31966_S_AT RNA polymerase 1-1 mm
MG-U74AV2:161347_R_AT RNA polymerase 1-1 mm
MOE430A:1417041_AT RNA polymerase 1-1 mm
MOUSE430A_2:1417041_AT RNA polymerase 1-1 mm
MOUSE430_2:1417041_AT RNA polymerase 1-1 mm
MU19KSUBA:TC15806_F_AT RNA polymerase 1-1 (Rpo1-1), mRNA mm
MU19KSUBA:TC15806_I_AT RNA polymerase 1-1 (Rpo1-1), mRNA mm
MU19KSUBA:TC16022_AT RNA polymerase 1-1 (Rpo1-1), mRNA mm
MU19KSUBC:TC36159_AT RNA polymerase 1-1 (Rpo1-1), mRNA mm
MU11KSUBA:D19001_RC_F_AT RNA polymerase 1-1 (Rpo1-1), mRNA mm
RG-U34C:RC_AA818183_AT RNA polymerase 1-1 (predicted) rn
RAE230A:1374289_AT RNA polymerase 1-1 (predicted) rn
RAT230_2:1374289_AT RNA polymerase 1-1 (predicted) rn
RAE230B:1380633_AT RNA polymerase 1-1 (predicted) rn
RAT230_2:1380633_AT RNA polymerase 1-1 (predicted) rn
YEAST_2:1773288_AT RNA polymerase subunit, common to RNA polymerase I and III Sc
Protein Similarities
Method ID Description E-Value
blast AAL38961 Hypothetical protein H43I07.2 [Caenorhabditis elegans] ref|NP_504166.2| H43I07.2 [Caenorhabditis elegans] 0.0
blast T34006 hypothetical protein H43I07.2 - Caenorhabditis elegans 0.0
blast CAE58323 Hypothetical protein CBG01436 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001700 EMBL-EBI RNA polymerase, alpha chain, bacterial and organelle 4.5E-56
Pfam IPR008193 EMBL-EBI DNA-directed RNA polymerase, 13 to 16 kDa subunit 2.6E-19
Pfam IPR010754 EMBL-EBI Optic atrophy 3 2.0E-7
Pfam IPR001700 EMBL-EBI RNA polymerase, alpha chain, bacterial and organelle 4.5E-56
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 6.2E-24
Pfam IPR008193 EMBL-EBI DNA-directed RNA polymerase, 13 to 16 kDa subunit 1.3E-15
Sequence
Target Sequence 
>C. ELEGANS:188996_AT
aaatgcggtgccgacggctaccgatccgaagcagctttatcacaatagctcggtctactc
acgtgcttttgaatgggtaccgattgctgatcagaagacgcaattcaccgaagaagccca
tccacgtatggtttctgatgatattctcgttgccaagcttcgtcctggacaggaaattga
agccagttgccatgcggtcaagggaatcggacgggatcatgcaaagttctcaccggttgc
tactgcgtcctatagactgcttccaacgatccgcttgaacgccgaaatttcgggtgaagc
tgccgaacgtctcaaatcagtattcagcgagggagttattgctatcgagaagaaaggagc
caaacgaattgctgttgtcaaggatgctcgcaaggatacgtgcagtcgtaacgtgttccg
ccacgaagatctgtcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCGGTGCCGACGGCTACCGAT 435 117 1515 Antisense
CACAATAGCTCGGTCTACTCACGTG 658 193 1555 Antisense
AGAAGCCCATCCACGTATGGTTTCT 345 73 1626 Antisense
ATGATATTCTCGTTGCCAAGCTTCG 65 47 1652 Antisense
AATTGAAGCCAGTTGCCATGCGGTC 299 163 1689 Antisense
GACGGGATCATGCAAAGTTCTCACC 268 377 1724 Antisense
TACTGCGTCCTATAGACTGCTTCCA 222 647 1755 Antisense
AACGATCCGCTTGAACGCCGAAATT 184 119 1779 Antisense
AAGCTGCCGAACGTCTCAAATCAGT 658 149 1811 Antisense
TACGTGCAGTCGTAACGTGTTCCGC 77 649 1911 Antisense
TGTTCCGCCACGAAGATCTGTCGAA 148 563 1928 Antisense
Sequence Source Affymetrix Proprietary Database