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[188995_at] transferase

Description H23N18.4 /REP_DB=WormBase Gene ID /WP=CE20986 /TR=Q9TXZ3 /GB=AAD14733.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster 6grp_total > 22      4grp_total > 0      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 82.3
(1.1)
A 		59.5
(-3)
A 		92.8
(3)
A 		88.9
(2.3)
A 		33
B 74.4
(-2)
M 		98.7
(1.3)
A 		111.1
(3)
A 		66.9
(-3)
A 		44
C 52.4
(-1.3)
A 		18.7
(-3)
A 		82.1
(0.2)
A 		138.6
(3)
P 		120
avr 69.7
(-1.4) 		59
(-3) 		95.3
(2.6) 		98.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 79.6
(3)
A 		63.2
(-0.1)
A 		65.2
(0.3)
A 		66.5
(0.5)
A 		66.4
(0.5)
A 		48.1
(-3)
A 		32
B 77.3
(1.8)
A 		89
(3)
A 		75.8
(1.6)
A 		39.5
(-2.2)
A 		46.6
(-1.4)
A 		31.4
(-3)
A 		58
C 59
(0.1)
A 		88.7
(3)
A 		74.5
(1.6)
A 		50.5
(-0.8)
A 		27.6
(-3)
A 		33.3
(-2.4)
A 		61
avr 72
(1.8) 		80.3
(3) 		71.8
(1.8) 		52.2
(-0.9) 		46.9
(-1.7) 		37.6
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 30
(3)
A 		12.9
(-3)
A 		24.3
(1)
A 		13
(-3)
A 		17
B 23.7
(1.9)
M 		24.4
(2.3)
A 		25.7
(3)
A 		14.3
(-3)
A 		11
C 17.4
(0.1)
A 		5.4
(-3)
A 		28.6
(3)
A 		23.4
(1.7)
P 		23
avr 23.7
(1.8) 		14.2
(-3) 		26.2
(3) 		16.9
(-1.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.7
(-1.3)
A 		22.5
(3)
A 		14.2
(-1.6)
A 		16.9
(-0.1)
A 		20
(1.6)
A 		11.7
(-3)
A 		11
B 26.9
(2.2)
A 		29.6
(3)
A 		18.4
(-0.5)
A 		10.5
(-3)
A 		18.9
(-0.4)
A 		11.7
(-2.6)
A 		19
C 21.9
(1.3)
A 		27.1
(3)
A 		19
(0.3)
A 		10.2
(-2.6)
A 		8.9
(-3)
A 		11.1
(-2.3)
A 		18
avr 21.2
(0.9) 		26.4
(3) 		17.2
(-0.7) 		12.5
(-2.6) 		15.9
(-1.2) 		11.5
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188995_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15629
Sequence Type Exemplar sequence
Representative Public ID H23N18.4 NCBI
Target Description H23N18.4 /REP_DB=WormBase Gene ID /WP=CE20986 /TR=Q9TXZ3 /GB=AAD14733.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071913 NCBI Caenorhabditis elegans H23N18.4 (transferase) mRNA, complete cds. 11/11 None
SNAP00000039199 ENSEMBL cdna:SNAP chromosome:CEL140:V:4901318:4902824:1 11/11 None
GENEFINDER00000039210 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4901318:4902929:1 11/11 None
H23N18.4 ENSEMBL cdna:known chromosome:CEL140:V:4901204:4902824:1 gene:H23N18.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4901203-4902824(+) 100.0 100.0
Public Domain and Genome References
Gene Title transferase
Ensembl H23N18.4
Entrez Gene 186769 Entrez gene
SwissProt Q9TXZ3 EMBL-EBI
WormBase CE20986 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14733 Hypothetical protein H23N18.4 [Caenorhabditis elegans] ref|NP_504314.1| H23N18.4 [Caenorhabditis elegans] 0.0
blast AAC69026 Udp-glucuronosyltransferase protein 9 [Caenorhabditis elegans] ref|NP_504312.1| T19H12.1 [Caenorhabditis elegans] 0.0
blast AAD14732 Udp-glucuronosyltransferase protein 8 [Caenorhabditis elegans] ref|NP_504315.1| H23N18.3 [Caenorhabditis elegans] 0.0
blast CAE64224 Hypothetical protein CBG08857 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.5E-24
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.5E-24
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.5E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504314.1 1 7-29
H23N18.4 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:188995_AT
cacttccagaagtcacatttatttggaaatatgagaaagatgacgtggagttccagaaga
gacttccaaaaaatgttcatttgaagaactgggttccgcagccttcactacttgccgata
aacgcttgaagctattcgtgacccatggaggtctgggaagtacaatggaagtagcttaca
ccgggaagccagccctaatgattccaatttttggagatcaacctcagaatgcagatatgc
tttcaagacacggaggagcggttgcctatgacaaatttgaactagctgatggagataagt
tgatcaaaattgtaaaggatatggtttccaatccaaaatatgagaaaaatgctcaagagc
tgctgagagtgctctccaatcaaccaattgatccagtcatgaacctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTCCAGAAGTCACATTTATTTG 124 197 1004 Antisense
TGAAGAACTGGGTTCCGCAGCCTTC 323 575 1085 Antisense
GCCTTCACTACTTGCCGATAAACGC 364 279 1104 Antisense
AACGCTTGAAGCTATTCGTGACCCA 463 145 1124 Antisense
ATTCGTGACCCATGGAGGTCTGGGA 329 1 1137 Antisense
TACACCGGGAAGCCAGCCCTAATGA 305 639 1180 Antisense
GCCAGCCCTAATGATTCCAATTTTT 427 279 1191 Antisense
GGAGATCAACCTCAGAATGCAGATA 172 519 1216 Antisense
GACACGGAGGAGCGGTTGCCTATGA 507 363 1250 Antisense
GAGCTGCTGAGAGTGCTCTCCAATC 155 387 1360 Antisense
ACCAATTGATCCAGTCATGAACCTG 198 85 1386 Antisense
Sequence Source Affymetrix Proprietary Database