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[188993_at]

Description T04B2.1 /REP_DB=WormBase Gene ID /WP=CE03608 /TR=Q22150 /GB=CAA92613.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_total > 65      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 29.7
(-0.7)
A 		24.3
(-1.2)
A 		5.1
(-3)
A 		68.9
(3)
A 		64
B 12.7
(-2.8)
A 		12
(-3)
A 		16.3
(-2)
A 		36.8
(3)
A 		25
C 56
(3)
A 		14.4
(-3)
A 		27.8
(-1.1)
A 		50.9
(2.3)
A 		42
avr 32.8
(-0.3) 		16.9
(-2.9) 		16.4
(-3) 		52.2
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 2
(-2.9)
A 		17.5
(0.2)
A 		31.5
(3)
A 		3.2
(-2.7)
A 		1.7
(-3)
A 		3.8
(-2.6)
A 		30
B 1.2
(-3)
A 		17.7
(0.3)
A 		12.5
(-0.8)
A 		5.1
(-2.2)
A 		19
(0.5)
A 		31.4
(3)
A 		30
C 29.2
(0.2)
A 		4.4
(-2.7)
A 		2.1
(-2.9)
A 		54
(3)
A 		1.4
(-3)
A 		23.1
(-0.5)
A 		53
avr 10.8
(-1.5) 		13.2
(-0.4) 		15.4
(0.6) 		20.8
(3) 		7.4
(-3) 		19.4
(2.4) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.8
(3)
A 		5.3
(-0.5)
A 		1.3
(-3)
A 		10.1
(2.6)
A 		10
B 4.1
(-1.6)
A 		3
(-3)
A 		3.8
(-2)
A 		7.8
(3)
A 		5
C 18.5
(3)
A 		4.1
(-3)
A 		9.7
(-0.7)
A 		8.6
(-1.1)
A 		14
avr 11.1
(3) 		4.1
(-3) 		4.9
(-2.3) 		8.8
(1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		6.2
(2.4)
A 		6.9
(3)
A 		0.8
(-2.6)
A 		0.5
(-2.9)
A 		0.9
(-2.5)
A 		7
B 0.4
(-3)
A 		5.9
(-0.1)
A 		3
(-1.6)
A 		1.4
(-2.5)
A 		7.7
(0.9)
A 		11.7
(3)
A 		11
C 10.8
(2.9)
A 		1.3
(-2.5)
A 		0.5
(-3)
A 		10.9
(3)
A 		0.5
(-3)
A 		7.7
(1.2)
A 		10
avr 3.9
(-1.5) 		4.5
(-0.5) 		3.5
(-2.1) 		4.4
(-0.7) 		2.9
(-3) 		6.8
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9225
Sequence Type Exemplar sequence
Representative Public ID T04B2.1 NCBI
Target Description T04B2.1 /REP_DB=WormBase Gene ID /WP=CE03608 /TR=Q22150 /GB=CAA92613.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005412 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10041102:10042581:-1 11/11 None
T04B2.1 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:10041102:10042404:-1 gene:T04B2.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005425 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10041107-10042410(-) 94.71 100.0
Public Domain and Genome References
Ensembl T04B2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T24440 hypothetical protein T04B2.1 - Caenorhabditis elegans 1.0E-117
blast CAE59960 Hypothetical protein CBG03450 [Caenorhabditis briggsae] 4.0E-67
blast CAA93099 Hypothetical protein K08F4.9 [Caenorhabditis elegans] emb|CAA93091.1| Hypothetical protein K08F4.9 [Caenorhabditis elegans] ref|NP_501850.1| DeHydrogenases, Short chain family member (dhs-12) [Caenorhabditis elegans] 7.0E-66
Sequence
Target Sequence 
>C. ELEGANS:188993_AT
gatcacggactcaatttgcttattaacaacgctggagttattgaggtttaccatacaaaa
gatgctccaaaaagggctccaattttgagatgcatcgatgtgaatgcagtcagtgcactg
ttggcttctcaggcaataattgatttgttcaaaattagagtaactttcgaatttcagcat
ttccttccacttcttcaaaaagcagctgcattgactcaaggagatgaactttcagctaat
cgagctgctattataaatattggatcagactgttcttcacaaactttgaatgttactggc
ttctgcaatgaggctctcgttgcatacaaaatgagcaacgtcgcaatgctctgtttcgct
cgttcacttgttgctgacttcaagacgttgaatattcctgttcttgtcacaacaatccat
ccaggatgggtacttactgacatgggaggacccaatgcggatattacggttgaagaatct
gcatcaaagattgttaatagcatcagtcacctaaattctactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCACGGACTCAATTTGCTTATTA 628 421 274 Antisense
GATGCTCCAAAAAGGGCTCCAATTT 628 413 334 Antisense
GCAGTCAGTGCACTGTTGGCTTCTC 123 313 379 Antisense
TTCGAATTTCAGCATTTCCTTCCAC 579 695 439 Antisense
GGATCAGACTGTTCTTCACAAACTT 597 511 535 Antisense
GAATGTTACTGGCTTCTGCAATGAG 510 331 561 Antisense
ATGAGGCTCTCGTTGCATACAAAAT 373 45 581 Antisense
TGAATATTCCTGTTCTTGTCACAAC 646 575 662 Antisense
GTACTTACTGACATGGGAGGACCCA 296 459 703 Antisense
GGAGGACCCAATGCGGATATTACGG 174 515 718 Antisense
GCATCAGTCACCTAAATTCTACTCA 118 309 773 Antisense
Sequence Source Affymetrix Proprietary Database