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[188992_at] thioredoxin

Description K02H11.6 /REP_DB=WormBase Gene ID /WP=CE18003 /TR=O61985 /GB=AAC17785.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=thioredoxin
Cluster 6grp_total > 49      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 22.2
(-3)
A 		27.7
(-2.5)
A 		87.7
(3)
A 		66.1
(1)
A 		66
B 30.8
(-0.6)
A 		23.6
(-3)
A 		41.4
(3)
A 		38.7
(2.1)
A 		18
C 32
(-3)
A 		47.7
(-1.6)
A 		59.8
(-0.5)
P 		99.5
(3)
A 		68
avr 28.3
(-3) 		33
(-2.3) 		63
(2.2) 		68.1
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 59.9
(3)
A 		30.1
(-1.3)
A 		49.4
(1.5)
A 		17.9
(-3)
A 		55.1
(2.3)
A 		39.5
(0.1)
A 		42
B 48.6
(1.2)
P 		18.1
(-2.9)
A 		35.9
(-0.5)
A 		17.4
(-3)
A 		43
(0.4)
A 		62.3
(3)
P 		45
C 25.5
(-1.1)
A 		57.2
(2.8)
A 		9.8
(-3)
A 		59.1
(3)
P 		38.8
(0.5)
A 		42.6
(1)
A 		49
avr 44.7
(1.8) 		35.1
(-1.7) 		31.7
(-2.9) 		31.5
(-3) 		45.6
(2.1) 		48.1
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.1
(-2.3)
A 		6
(-3)
A 		22.9
(3)
A 		9.7
(-1.7)
A 		17
B 9.8
(3)
A 		5.8
(-3)
A 		9.6
(2.7)
A 		8.2
(0.6)
A 		4
C 10.6
(-3)
A 		13.7
(-1.2)
A 		20.8
(3)
P 		16.8
(0.6)
A 		10
avr 9.5
(-2.4) 		8.5
(-3) 		17.8
(3) 		11.6
(-1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11
(0.2)
A 		10.7
(0.1)
A 		10.8
(0.1)
A 		4.5
(-3)
A 		16.6
(3)
A 		9.6
(-0.5)
A 		12
B 16.9
(1)
P 		6
(-2.5)
A 		8.7
(-1.7)
A 		4.6
(-3)
A 		17.5
(1.2)
A 		23.2
(3)
P 		19
C 9.5
(-0.2)
A 		17.4
(3)
A 		2.5
(-3)
A 		11.9
(0.8)
P 		12.5
(1)
A 		14.3
(1.8)
A 		15
avr 12.5
(0.8) 		11.4
(0) 		7.3
(-2.8) 		7
(-3) 		15.5
(2.9) 		15.7
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15419
Sequence Type Exemplar sequence
Representative Public ID K02H11.6 NCBI
Target Description K02H11.6 /REP_DB=WormBase Gene ID /WP=CE18003 /TR=O61985 /GB=AAC17785.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=thioredoxin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071039(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071039 NCBI Caenorhabditis elegans K02H11.6 (thioredoxin) mRNA, complete cds. 9/11 None
SNAP00000029159 ENSEMBL cdna:SNAP chromosome:CEL140:V:1533721:1536887:-1 11/11 None
K02H11.6 ENSEMBL cdna:known chromosome:CEL140:V:1533721:1534244:-1 gene:K02H11.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171436 2/11 Cross Hyb Matching Probes None
K02H11.9 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1533720-1536809(-) 100.0 100.0
Public Domain and Genome References
Gene Title thioredoxin
Ensembl K02H11.6
Entrez Gene 186914 Entrez gene
SwissProt O61985 EMBL-EBI
WormBase CE30379 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.12503.1.S1_A_AT nucleoredoxin gga
CHICKEN:GGA.12503.2.S1_AT Nucleoredoxin gga
U133_X3P:HS2.309216.1.S1_3P_X_AT chromosome 9 open reading frame 121 hs
U133_X3P:1552816_3P_AT chromosome 9 open reading frame 121 hs
HG-U133_PLUS_2:1552816_AT chromosome 9 open reading frame 121 hs
HG-U95C:53875_AT Chromosome 9 open reading frame 121 hs
MOE430A:1451861_AT RIKEN cDNA 4930519N16 gene mm
MOUSE430A_2:1451861_AT RIKEN cDNA 4930519N16 gene mm
MOUSE430_2:1451861_AT RIKEN cDNA 4930519N16 gene mm
MOE430B:1429133_AT RIKEN cDNA 4930519N16 gene mm
MOUSE430_2:1429133_AT RIKEN cDNA 4930519N16 gene mm
RAE230B:1391749_A_AT similar to RIKEN cDNA 4930519N16 (predicted) rn
RAT230_2:1391749_A_AT similar to RIKEN cDNA 4930519N16 (predicted) rn
RG-U34B:RC_AA900677_AT Similar to RIKEN cDNA 4930519N16 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast T33313 hypothetical protein K02H11.6 - Caenorhabditis elegans 1.0E-179
blast AAM15584 Hypothetical protein K02H11.9 [Caenorhabditis elegans] ref|NP_741509.1| K02H11.9 [Caenorhabditis elegans] 1.0E-89
blast AAM15583 Hypothetical protein K02H11.6 [Caenorhabditis elegans] ref|NP_503440.2| K02H11.6 [Caenorhabditis elegans] 6.0E-80
blast T33313 hypothetical protein K02H11.6 - Caenorhabditis elegans 6.0E-80
blast AAM15583 Hypothetical protein K02H11.6 [Caenorhabditis elegans] ref|NP_503440.2| K02H11.6 [Caenorhabditis elegans] 6.0E-79
blast AAB37590 Hypothetical protein T20D4.7 [Caenorhabditis elegans] ref|NP_503954.1| T20D4.7 [Caenorhabditis elegans] 1.0E-58
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 5.59999990463257
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 2.2E-5
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.15
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 2.2E-5
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.15
Sequence
Target Sequence 
>C. ELEGANS:188992_AT
gaacgtcaaacatagagccctgtgtgattattatcgatgcaggctcgactgcaaaaccat
ctattcgaatgaagagaaggagtgtctggaaagagagatggaagagcagaagagaatcag
taatgagctcaaaaagaagctggatgcagcgttggagcatatcgatgtattaaatgggaa
aaatatggatattttggctggaatgaaacttgaaaaacttgataagtcgttggtcgacgc
aaatgaagctcttgccggaaaaatcgttggaatctacttttcggctcattggtgtggacc
atgccgcaacttcacaccggttctcaaggatttctatgaagaggttcaagatgatttcga
gatcgtcttcgcctcttccgatcaaagcgagagtgacctgaaaaattatatggaggagtg
ccacggaaactggtattatattccatttggaaatgacgccgaagagaagctttccaccaa
gtacgatgttagcactattccaactcttatattcctcaagccagacggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTCAAACATAGAGCCCTGTGT 270 347 423 Antisense
GCTCGACTGCAAAACCATCTATTCG 254 299 465 Antisense
ATCGTTGGAATCTACTTTTCGGCTC 593 35 685 Antisense
TCTACTTTTCGGCTCATTGGTGTGG 171 607 695 Antisense
ATTGGTGTGGACCATGCCGCAACTT 389 3 710 Antisense
TCTTCGCCTCTTCCGATCAAAGCGA 554 617 788 Antisense
GGAGGAGTGCCACGGAAACTGGTAT 408 515 834 Antisense
TGACGCCGAAGAGAAGCTTTCCACC 240 569 876 Antisense
TTTCCACCAAGTACGATGTTAGCAC 47 661 893 Antisense
GCACTATTCCAACTCTTATATTCCT 667 315 914 Antisense
CTTATATTCCTCAAGCCAGACGGTA 65 221 928 Antisense
Sequence Source Affymetrix Proprietary Database