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[188991_at] dehydrogenase

Description C06B8.3 /REP_DB=WormBase Gene ID /WP=CE07971 /TR=O17574 /GB=CAB03851.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_total > 35      4grp_total > 47      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 104.8
(3)
P 		38.9
(-1.8)
A 		34.4
(-2.1)
A 		22.2
(-3)
A 		83
B 62.6
(3)
P 		48
(-0)
A 		39.4
(-1.8)
A 		33.7
(-3)
A 		29
C 115.3
(3)
P 		26.8
(-3)
A 		30.7
(-2.7)
A 		41.4
(-2)
A 		89
avr 94.2
(3) 		37.9
(-2.5) 		34.8
(-2.8) 		32.4
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 91.5
(3)
P 		79.5
(2)
P 		65.4
(0.7)
A 		50.2
(-0.6)
M 		22.8
(-3)
A 		57
(-0)
A 		69
B 80
(3)
P 		79.9
(3)
P 		53.5
(-0.3)
A 		53
(-0.3)
P 		31.4
(-3)
A 		63
(0.9)
P 		49
C 49.7
(-0.9)
M 		84.4
(3)
P 		82.5
(2.8)
P 		73.3
(1.8)
A 		31.8
(-2.9)
A 		31.1
(-3)
P 		53
avr 73.7
(2.1) 		81.3
(3) 		67.1
(1.4) 		58.8
(0.4) 		28.7
(-3) 		50.4
(-0.5) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 38.2
(3)
P 		8.5
(-2.1)
A 		9
(-2)
A 		3.2
(-3)
A 		35
B 20
(3)
P 		11.9
(-0.8)
A 		9.1
(-2.1)
A 		7.2
(-3)
A 		13
C 38.2
(3)
P 		7.7
(-2.9)
A 		10.7
(-2.3)
A 		7
(-3)
A 		31
avr 32.1
(3) 		9.4
(-2.2) 		9.6
(-2.1) 		5.8
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 16.9
(-0.2)
P 		28.3
(3)
P 		14.2
(-1)
A 		12.7
(-1.4)
M 		6.9
(-3)
A 		13.9
(-1)
A 		21
B 27.8
(3)
P 		26.6
(2.5)
P 		13
(-2.9)
A 		14
(-2.5)
P 		12.8
(-3)
A 		23.5
(1.3)
P 		15
C 18.4
(0.1)
M 		25.8
(3)
P 		21
(1.1)
P 		14.7
(-1.3)
A 		10.3
(-3)
A 		10.4
(-3)
P 		16
avr 21
(0.9) 		26.9
(3) 		16.1
(-0.8) 		13.8
(-1.7) 		10
(-3) 		15.9
(-0.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14307
Sequence Type Exemplar sequence
Representative Public ID C06B8.3 NCBI
Target Description C06B8.3 /REP_DB=WormBase Gene ID /WP=CE07971 /TR=O17574 /GB=CAB03851.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074454 NCBI Caenorhabditis elegans C06B8.3 (dehydrogenase) mRNA, complete cds. 11/11 None
C06B8.3 ENSEMBL cdna:known chromosome:CEL140:V:15484918:15487210:-1 gene:C06B8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044319 2/11 Cross Hyb Matching Probes None
GENEFINDER00000044327 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15484917-15487210(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Gene Symbol nhr-151
Ensembl C06B8.3
Entrez Gene 182298 Entrez gene
SwissProt O17574 EMBL-EBI
WormBase CE07971 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03851 Hypothetical protein C06B8.3 [Caenorhabditis elegans] ref|NP_506855.1| C06B8.3 [Caenorhabditis elegans] 0.0
blast CAB05801 Hypothetical protein F26D2.15 [Caenorhabditis elegans] emb|CAB04187.1| Hypothetical protein F26D2.15 [Caenorhabditis elegans] ref|NP_507157.1| F26D2.15 [Caenorhabditis elegans] 1.0E-64
blast NP_503753 R05D8.9 [Caenorhabditis elegans] gb|AAF39944.1| Hypothetical protein R05D8.9 [Caenorhabditis elegans] 5.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.2E-14
Sequence
Target Sequence 
>C. ELEGANS:188991_AT
agtccatcatcattgttaacagcccgaataattcttcgcgatacttccaatgttcattgt
gccgtgctccactggaaacaattcgaagtgactcgaatacgtttcagaaatattttcagg
gagctcttttgcggaactttattccaaagttatggctgattgatcctgtcttggattata
tacggaattttgaggaatacgatgcgattggacaatctgatttagaaaaactaatcatcg
atttttacaagggagctttttcggtaaaatgtagcatgagtgatgaagatataataagaa
ctttttcaccaatttggtcgttctactttttcaatttgattcaacctatcatatcgatga
agttggaggagccagaatttatggcaattgtttggctgatgttttttgatagcagttggt
caaataacttcaatccaaaattaacgattaatgaaattcaggctactcaaatatatccga
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCCATCATCATTGTTAACAGCCC 73 61 518 Antisense
AACAGCCCGAATAATTCTTCGCGAT 248 137 535 Antisense
TCTTCGCGATACTTCCAATGTTCAT 364 617 550 Antisense
TTGTGCCGTGCTCCACTGGAAACAA 318 707 574 Antisense
GAAGTGACTCGAATACGTTTCAGAA 676 333 602 Antisense
AATATTTTCAGGGAGCTCTTTTGCG 575 173 626 Antisense
GGAGCTCTTTTGCGGAACTTTATTC 413 493 637 Antisense
TATGGCTGATTGATCCTGTCTTGGA 355 655 668 Antisense
TCACCAATTTGGTCGTTCTACTTTT 184 625 823 Antisense
GGTCGTTCTACTTTTTCAATTTGAT 12 501 833 Antisense
TTCAGGCTACTCAAATATATCCGAT 425 687 974 Antisense
Sequence Source Affymetrix Proprietary Database