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[188987_at] dehydrogenase

Description F20G2.1 /REP_DB=WormBase Gene ID /WP=CE09504 /TR=Q93544 /GB=CAB02086.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_high_8_8 > 57      6grp_highest_nonorm > 60      6grp_total > 06      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 166
(3)
P 		106.6
(-1.1)
P 		144.9
(1.5)
P 		80
(-3)
M 		86
B 137.1
(2.8)
P 		120.1
(1.8)
P 		139.7
(3)
P 		40.2
(-3)
A 		100
C 131.7
(3)
P 		81
(-3)
M 		103.1
(-0.4)
P 		101.1
(-0.6)
P 		51
avr 144.9
(3) 		102.6
(-0.6) 		129.2
(1.7) 		73.8
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1080
1 2 3 4 5 6 range
A 1130.6
(3)
P 		342.3
(-1.4)
P 		413.3
(-1)
P 		169.1
(-2.4)
P 		114.7
(-2.7)
P 		67.5
(-3)
P 		1063
B 993
(3)
P 		432
(-0.6)
P 		428.9
(-0.6)
P 		155.3
(-2.3)
P 		166.7
(-2.3)
P 		51
(-3)
P 		942
C 923.1
(3)
P 		411.6
(-0.6)
P 		380.3
(-0.8)
P 		176.9
(-2.3)
P 		115.1
(-2.7)
P 		73.9
(-3)
P 		849
avr 1015.6
(3) 		395.3
(-0.9) 		407.5
(-0.8) 		167.1
(-2.4) 		132.2
(-2.6) 		64.1
(-3) 		952
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 60.4
(3)
P 		23.1
(-1.6)
P 		37.9
(0.2)
P 		11.7
(-3)
M 		49
B 43.7
(3)
P 		29.7
(0.6)
P 		32.4
(1.1)
P 		8.6
(-3)
A 		35
C 43.6
(3)
P 		23.3
(-1.6)
M 		35.9
(1.3)
P 		17.1
(-3)
P 		27
avr 49.2
(3) 		25.4
(-0.9) 		35.4
(0.7) 		12.5
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 208.4
(3)
P 		121.8
(0.3)
P 		90
(-0.7)
P 		42.9
(-2.2)
P 		34.6
(-2.4)
P 		16.4
(-3)
P 		192
B 345.5
(3)
P 		143.8
(-0.7)
P 		104.1
(-1.4)
P 		41.1
(-2.6)
P 		67.7
(-2.1)
P 		19
(-3)
P 		327
C 342.1
(3)
P 		125.6
(-1.1)
P 		96.8
(-1.6)
P 		35.6
(-2.8)
P 		37.3
(-2.8)
P 		24.7
(-3)
P 		317
avr 298.7
(3) 		130.4
(-0.6) 		97
(-1.3) 		39.9
(-2.6) 		46.5
(-2.4) 		20
(-3) 		279
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13823
Sequence Type Exemplar sequence
Representative Public ID F20G2.1 NCBI
Target Description F20G2.1 /REP_DB=WormBase Gene ID /WP=CE09504 /TR=Q93544 /GB=CAB02086.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074005 NCBI Caenorhabditis elegans F20G2.1 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000006705 ENSEMBL cdna:SNAP chromosome:CEL140:V:13754925:13756154:-1 11/11 None
GENEFINDER00000006715 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13754925:13756154:-1 11/11 None
F20G2.1 ENSEMBL cdna:known chromosome:CEL140:V:13754925:13756154:-1 gene:F20G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13754924-13756154(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl F20G2.1
Entrez Gene 184742 Entrez gene
SwissProt Q93544 EMBL-EBI
WormBase CE09504 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.12554.1.S1_S_AT similar to CG10964-PA gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02086 Hypothetical protein F20G2.1 [Caenorhabditis elegans] ref|NP_506406.1| F20G2.1 [Caenorhabditis elegans] 1.0E-130
blast CAB02087 Hypothetical protein F20G2.2 [Caenorhabditis elegans] ref|NP_506407.1| F20G2.2 [Caenorhabditis elegans] 1.0E-107
blast CAE66249 Hypothetical protein CBG11493 [Caenorhabditis briggsae] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 9.8E-18
Sequence
Target Sequence 
>C. ELEGANS:188987_AT
gatactcgcgttcacattttacaattggacatcgattgcgacgactcaatcagaaagttg
ggagccgaggtggaaaaactagtcggtgaggatgggcttactgttctgatcaacaatgct
ggaattttcgtcccttatgatattgatggagaaaaaagccgatcgacattgattcgtcag
ctcgagacaaatacaatctcaactgtccttattactcaagaattacttccattgctcaaa
agagctgctgccaaaaatagaggagaagggtactccatcaatagatctgcaattatcaac
atctcctcgacagctggttcaattacaaaaattgatgcatcatacaacataccattggtt
gcttatcgcatgagcaaatcggctcttaactcctttggcaagtcgtgttcggtggatctt
gccaagtatcatattttggttactacgttctgcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACTCGCGTTCACATTTTACAAT 44 425 160 Antisense
TTGGACATCGATTGCGACGACTCAA 415 709 184 Antisense
GGATGGGCTTACTGTTCTGATCAAC 374 515 249 Antisense
GGAATTTTCGTCCCTTATGATATTG 511 533 280 Antisense
GCCGATCGACATTGATTCGTCAGCT 293 283 317 Antisense
ACAATCTCAACTGTCCTTATTACTC 84 113 352 Antisense
TGCAATTATCAACATCTCCTCGACA 278 577 447 Antisense
CAAATCGGCTCTTAACTCCTTTGGC 508 191 534 Antisense
AACTCCTTTGGCAAGTCGTGTTCGG 145 139 547 Antisense
TCGTGTTCGGTGGATCTTGCCAAGT 36 605 562 Antisense
ATTTTGGTTACTACGTTCTGCCCAG 200 15 592 Antisense
Sequence Source Affymetrix Proprietary Database