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[188986_at] 7TM receptor

Description F55B12.6 /REP_DB=WormBase Gene ID /WP=CE11144 /TR=Q93797 /GB=CAB02127.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 64      4grp_total > 04      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 4.1
(-3)
A 		6.1
(-2.9)
A 		20.6
(-2)
A 		101.3
(3)
A 		97
B 36.7
(3)
A 		16.8
(-0.6)
A 		3.1
(-3)
A 		14.3
(-1)
A 		34
C 25.6
(-1.3)
A 		20.6
(-1.7)
A 		6.6
(-3)
A 		72.4
(3)
P 		66
avr 22.1
(-1.6) 		14.5
(-2.5) 		10.1
(-3) 		62.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 3.3
(-2.8)
A 		1.8
(-3)
A 		44.3
(3)
A 		4
(-2.7)
A 		7
(-2.3)
A 		31.3
(1.2)
A 		43
B 3.7
(-3)
A 		13
(-0)
A 		4.6
(-2.7)
A 		22.4
(3)
A 		4.4
(-2.8)
A 		5.5
(-2.4)
A 		19
C 1.9
(-3)
A 		28.7
(0.2)
A 		12.4
(-1.8)
A 		52.5
(3)
A 		12.8
(-1.7)
A 		22.1
(-0.6)
A 		51
avr 3
(-3) 		14.5
(-0) 		20.4
(1.5) 		26.3
(3) 		8.1
(-1.7) 		19.6
(1.3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.5
(-2.9)
A 		1.3
(-3)
A 		5.4
(-1.2)
A 		14.8
(3)
A 		14
B 11.7
(3)
A 		4.1
(-1.1)
A 		0.7
(-3)
A 		3.1
(-1.7)
A 		11
C 8.5
(0.8)
A 		5.9
(-0.8)
A 		2.3
(-3)
A 		12.2
(3)
P 		10
avr 7.2
(0.7) 		3.8
(-2.2) 		2.8
(-3) 		10
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.6
(-3)
A 		9.6
(3)
A 		1
(-2.7)
A 		2.1
(-2)
A 		7.6
(1.7)
A 		9
B 1.3
(-2.8)
A 		4.3
(1)
A 		1.1
(-3)
A 		5.9
(3)
A 		1.8
(-2.1)
A 		2
(-1.9)
A 		5
C 0.7
(-3)
A 		8.7
(1.8)
A 		3.1
(-1.5)
A 		10.6
(3)
A 		4.1
(-0.9)
A 		7.4
(1.1)
A 		10
avr 0.9
(-3) 		4.5
(1.4) 		4.6
(1.5) 		5.8
(3) 		2.7
(-0.8) 		5.7
(2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13738
Sequence Type Exemplar sequence
Representative Public ID F55B12.6 NCBI
Target Description F55B12.6 /REP_DB=WormBase Gene ID /WP=CE11144 /TR=Q93797 /GB=CAB02127.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074024 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-165) (str-165) mRNA, complete cds. 11/11 None
GENEFINDER00000009652 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13834133:13835476:1 11/11 None
F55B12.6 ENSEMBL cdna:known chromosome:CEL140:V:13834133:13835476:1 gene:F55B12.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009644 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13834132-13835476(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-165
Ensembl F55B12.6
Entrez Gene 186282 Entrez gene
SwissProt Q93797 EMBL-EBI
WormBase CE11144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02127 Hypothetical protein F55B12.6 [Caenorhabditis elegans] ref|NP_506425.1| Seven TM Receptor family member (str-165) [Caenorhabditis elegans] 0.0
blast CAB02127 Hypothetical protein F55B12.6 [Caenorhabditis elegans] ref|NP_506425.1| Seven TM Receptor family member (str-165) [Caenorhabditis elegans] 1.0E-179
blast CAE66229 Hypothetical protein CBG11472 [Caenorhabditis briggsae] 1.0E-120
blast CAE66229 Hypothetical protein CBG11472 [Caenorhabditis briggsae] 1.0E-117
blast NP_500683 Seven TM Receptor family member (str-164) [Caenorhabditis elegans] gb|AAF60926.1| Seven tm receptor protein 164 [Caenorhabditis elegans] 1.0E-110
blast NP_500683 Seven TM Receptor family member (str-164) [Caenorhabditis elegans] gb|AAF60926.1| Seven tm receptor protein 164 [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-17
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-18
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.7E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506425.1 7 10-32,44-66,91-113,147-169,218-240,267-289,304-322
F55B12.6 7 10-32,44-66,91-113,147-169,218-240,267-289,304-322
GENEFINDER00000009652 7 10-32,44-66,91-113,133-155,203-225,252-274,289-307
Sequence
Target Sequence 
>C. ELEGANS:188986_AT
gaaccacggttctattttttgcacttcccactgatgagactactgaactcattagagaaa
gcgttatgaaacattacaatctggaaatggaagatgtgatctatgtaggagcgtcttatt
atcggagaaaaagcgacggaacattggaaatgatagtttctagttttattgccgcttcta
ttttctttacgatgatgggaacatcattttccgttgtatgttattacggtgtgttgagct
accgaagaatcgcaaatttgcagaacgaaggagaatctgaattcacgaaaaatttacaaa
aacagttactaaaagctctctttctacaggcgctcattccaattcttttgatgtatttac
cagttggaacatatatgactctacctgcattaaatttggattctgaagaattcagtaaat
ttgttactcttctctatgctatatacccagcaattgatccattacccttgttcttcgtaa
ttgataactatcgaattgcgttgaaaggatactttcttgggtgtccagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCACGGTTCTATTTTTTGCACT 705 343 497 Antisense
GTAGGAGCGTCTTATTATCGGAGAA 305 455 601 Antisense
AGTTTCTAGTTTTATTGCCGCTTCT 189 63 651 Antisense
GCTTCTATTTTCTTTACGATGATGG 43 307 670 Antisense
GGGAACATCATTTTCCGTTGTATGT 217 495 693 Antisense
GTGTGTTGAGCTACCGAAGAATCGC 555 487 725 Antisense
TAAAAGCTCTCTTTCTACAGGCGCT 418 639 806 Antisense
GCGCTCATTCCAATTCTTTTGATGT 23 289 826 Antisense
GGAACATATATGACTCTACCTGCAT 521 529 862 Antisense
GCAATTGATCCATTACCCTTGTTCT 481 323 946 Antisense
AGGATACTTTCTTGGGTGTCCAGGA 359 57 1002 Antisense
Sequence Source Affymetrix Proprietary Database