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[188982_at]

Description Y39A3A.1 /REP_DB=WormBase Gene ID /WP=CE21638 /TR=Q9N523 /GB=AAF60509.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 03      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 54.1
(-3)
A 		77
(3)
A 		69.2
(1)
A 		65.4
(-0)
A 		23
B 24.7
(-3)
A 		59.7
(2)
P 		26.9
(-2.7)
A 		66.4
(3)
A 		42
C 37.2
(-3)
A 		51.6
(-0.6)
A 		41.2
(-2.3)
A 		73.2
(3)
A 		36
avr 38.7
(-3) 		62.8
(1.9) 		45.8
(-1.6) 		68.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 59.8
(2.1)
P 		68.2
(3)
A 		37.2
(-0.3)
A 		59
(2)
A 		49.4
(1)
A 		11.6
(-3)
A 		57
B 60.6
(3)
A 		42
(-0.2)
A 		38.5
(-0.8)
A 		43.9
(0.1)
A 		26.1
(-3)
A 		31.2
(-2.1)
A 		35
C 11.8
(-3)
A 		19.7
(-1.5)
A 		24
(-0.7)
A 		43
(3)
A 		41.7
(2.8)
P 		29.5
(0.4)
A 		31
avr 44.1
(1.9) 		43.3
(1.7) 		33.2
(-0.8) 		48.6
(3) 		39.1
(0.7) 		24.1
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 19.7
(3)
A 		16.7
(1.2)
A 		18.1
(2)
A 		9.6
(-3)
A 		10
B 7.9
(-1.8)
A 		14.7
(3)
P 		6.2
(-3)
A 		14.2
(2.6)
A 		9
C 12.3
(-3)
A 		14.8
(3)
A 		14.4
(2)
A 		12.3
(-3)
A 		3
avr 13.3
(-0.7) 		15.4
(3) 		12.9
(-1.4) 		12
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11
(-0.7)
P 		24.2
(3)
A 		8.1
(-1.5)
A 		15
(0.4)
A 		14.9
(0.4)
A 		2.8
(-3)
A 		21
B 21.1
(3)
A 		14
(-0.6)
A 		9.3
(-3)
A 		11.6
(-1.8)
A 		10.6
(-2.3)
A 		11.6
(-1.8)
A 		12
C 4.4
(-3)
A 		6
(-1.9)
A 		6.1
(-1.9)
A 		8.6
(-0.2)
A 		13.5
(3)
P 		9.9
(0.6)
A 		9
avr 12.2
(0.8) 		14.7
(3) 		7.8
(-3) 		11.7
(0.4) 		13
(1.5) 		8.1
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8156
Sequence Type Exemplar sequence
Representative Public ID Y39A3A.1 NCBI
Target Description Y39A3A.1 /REP_DB=WormBase Gene ID /WP=CE21638 /TR=Q9N523 /GB=AAF60509.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000001100 ENSEMBL cdna:SNAP chromosome:CEL140:III:2055606:2056499:-1 11/11 None
GENEFINDER00000001105 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2055606:2056541:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60509 Hypothetical protein Y39A3A.1 [Caenorhabditis elegans] 0.0
blast AAF60509 Hypothetical protein Y39A3A.1 [Caenorhabditis elegans] 1.0E-173
blast AAB00629 Hypothetical protein R05G6.2 [Caenorhabditis elegans] 2.0E-83
blast T19261 hypothetical protein C14A6.4 - Caenorhabditis elegans 4.0E-83
blast AAB00629 Hypothetical protein R05G6.2 [Caenorhabditis elegans] 2.0E-78
blast T19261 hypothetical protein C14A6.4 - Caenorhabditis elegans 4.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 1.4E-36
Pfam IPR001888 EMBL-EBI Transposase, type 1 1.4E-36
Sequence
Target Sequence 
>C. ELEGANS:188982_AT
gactgggtaaaggatatcactactggagatgagaaatgggtactttatgtaaaccatacc
agaaagaaacagtgggtcccggtcgaggaacacgctgaacctgacctcaaaggggaactt
cacgagaaaaaagtacttctctcaatttggtgggacagtatgggtgtcatttttcgagag
ctgcttccagacggcgccaccatcaacgctgacctatactgcattcaattggaaaaggta
gtccatgctcatcaattacatcgccctagaggatcaaaattgttgctgctacatgacaac
gcaagacctcatacagctttgaagacccgccagaagctccagacactcggaatcgaagtt
ttgcctcacccaccgtattcaccggacttggctcctactgactaccatctgttccgctcc
ctccaaaatcaccttgccggacagaagtttcatgatcgaaaggccgtcgaaacgtggttg
gacgacttctttgcctctaaatctcaggagttctatgcggagggaatcgctcaacttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGGGTAAAGGATATCACTACTG 625 375 358 Antisense
GGTACTTTATGTAAACCATACCAGA 256 505 396 Antisense
GAGGAACACGCTGAACCTGACCTCA 351 403 442 Antisense
GTATGGGTGTCATTTTTCGAGAGCT 304 455 515 Antisense
TTTTTCGAGAGCTGCTTCCAGACGG 590 673 527 Antisense
ATCAACGCTGACCTATACTGCATTC 377 27 559 Antisense
GCTGACCTATACTGCATTCAATTGG 324 295 565 Antisense
CTCCAAAATCACCTTGCCGGACAGA 159 233 778 Antisense
GATCGAAAGGCCGTCGAAACGTGGT 271 377 811 Antisense
GACTTCTTTGCCTCTAAATCTCAGG 516 371 841 Antisense
ATGCGGAGGGAATCGCTCAACTTCC 219 35 872 Antisense
Sequence Source Affymetrix Proprietary Database