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[188980_at] transferase

Description H23N18.2 /REP_DB=WormBase Gene ID /WP=CE20984 /TR=Q9TXZ5 /GB=AAD14731.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster 6grp_total > 77      4grp_total > 09      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 806
1 2 3 4 range
A 33.6
(-3)
A 		128.8
(-2.1)
A 		144.6
(-2)
A 		673.5
(3)
P 		640
B 9.3
(-3)
A 		150.2
(-2)
P 		127.1
(-2.1)
P 		815.7
(3)
P 		806
C 25.3
(-3)
A 		143.8
(-1.8)
P 		90.5
(-2.3)
A 		609.7
(3)
P 		584
avr 22.7
(-3) 		140.9
(-2) 		120.7
(-2.1) 		699.6
(3) 		677

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1143
1 2 3 4 5 6 range
A 5.6
(-3)
A 		14.6
(-2.9)
A 		56.8
(-2.7)
A 		83.5
(-2.5)
A 		246.1
(-1.6)
P 		1035.3
(3)
P 		1030
B 32.8
(-3)
A 		31.7
(-3)
A 		45.4
(-2.9)
A 		109.6
(-2.6)
P 		253
(-1.8)
P 		1149
(3)
P 		1117
C 47.7
(-2.9)
A 		49.8
(-2.9)
A 		37.3
(-3)
A 		116.2
(-2.6)
M 		204.3
(-2.1)
P 		1117.2
(3)
P 		1080
avr 28.7
(-3) 		32
(-3) 		46.5
(-2.9) 		103.1
(-2.6) 		234.5
(-1.8) 		1100.5
(3) 		1072
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 12.2
(-3)
A 		28
(-1.9)
A 		37.8
(-1.2)
A 		98.6
(3)
P 		86
B 3
(-3)
A 		37.1
(-1.8)
P 		29.5
(-2.1)
P 		173.8
(3)
P 		171
C 8.4
(-3)
A 		41.3
(-0.9)
P 		31.5
(-1.5)
A 		102.8
(3)
P 		94
avr 7.9
(-3) 		35.5
(-1.6) 		32.9
(-1.7) 		125.1
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 1
(-3)
A 		5.2
(-2.9)
A 		12.4
(-2.7)
A 		21.2
(-2.5)
A 		74.3
(-1.2)
P 		252.1
(3)
P 		251
B 11.4
(-3)
A 		10.6
(-3)
A 		11
(-3)
A 		29
(-2.7)
P 		102.8
(-1.7)
P 		428.4
(3)
P 		418
C 17.7
(-2.9)
A 		15.2
(-2.9)
A 		9.5
(-3)
A 		23.4
(-2.8)
M 		66.1
(-2.1)
P 		374
(3)
P 		365
avr 10
(-3) 		10.3
(-3) 		11
(-3) 		24.5
(-2.7) 		81.1
(-1.8) 		351.5
(3) 		342
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15852
Sequence Type Exemplar sequence
Representative Public ID H23N18.2 NCBI
Target Description H23N18.2 /REP_DB=WormBase Gene ID /WP=CE20984 /TR=Q9TXZ5 /GB=AAD14731.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071915 NCBI Caenorhabditis elegans H23N18.2 (transferase) mRNA, complete cds. 11/11 None
GENEFINDER00000039208 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4903814:4908072:1 11/11 None
H23N18.2 ENSEMBL cdna:known chromosome:CEL140:V:4906097:4908072:1 gene:H23N18.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039201 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4906096-4908072(+) 100.0 100.0
Public Domain and Genome References
Gene Title transferase
Gene Symbol ugt-14
Ensembl H23N18.2
Entrez Gene 186767 Entrez gene
SwissProt Q9TXZ5 EMBL-EBI
WormBase CE20984 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14731 Udp-glucuronosyltransferase protein 14 [Caenorhabditis elegans] ref|NP_504316.1| H23N18.2 [Caenorhabditis elegans] 0.0
blast AAD14732 Udp-glucuronosyltransferase protein 8 [Caenorhabditis elegans] ref|NP_504315.1| H23N18.3 [Caenorhabditis elegans] 0.0
blast NP_504313 T19H12.11 [Caenorhabditis elegans] 0.0
blast CAE64223 Hypothetical protein CBG08856 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.4E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.0E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504316.1 2 7-29,491-513
H23N18.2 2 7-29,491-513
GENEFINDER00000039208 2 7-29,939-961
Sequence
Target Sequence 
>C. ELEGANS:188980_AT
gaaacttccgaagaatgtccacttgaaaaaatgggtcccccagccatcccttcttgctga
taaacgtttcgtaaagcgtttcgttacccatggagggctgggaagtacaatggaagttgc
ttacactggaaaaccagctcttatggtcccaatttttgccgatcaattcaacaatgcaaa
tatgcttgccagacacggaggagccattccttatgacaaacttgatctggcagatgggga
aaaattcacaaaaactgtacgggaaatggtcataaatcccaagtacaatgacaatgctaa
agtgttgctgataattctcctcaatcagccaattgatccgaaactgaatttgatgaaaca
tctcgagtttgcgatggaattcccaaatctccgctctcaaattccggaaatcaataacgc
tggtctcatcggttactattatcttgacataattgcatttttcattttatttgcctgttt
ggccttatatttgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTTCCGAAGAATGTCCACTTG 70 357 1056 Antisense
AGCGTTTCGTTACCCATGGAGGGCT 8 7 1130 Antisense
GGAAAACCAGCTCTTATGGTCCCAA 430 527 1183 Antisense
ATGGTCCCAATTTTTGCCGATCAAT 188 51 1198 Antisense
CTTGCCAGACACGGAGGAGCCATTC 193 219 1240 Antisense
GGAGCCATTCCTTATGACAAACTTG 58 523 1255 Antisense
GTGTTGCTGATAATTCTCCTCAATC 577 485 1357 Antisense
GCGATGGAATTCCCAAATCTCCGCT 658 289 1426 Antisense
AAATCTCCGCTCTCAAATTCCGGAA 183 117 1440 Antisense
GCTGGTCTCATCGGTTACTATTATC 50 295 1474 Antisense
GCCTGTTTGGCCTTATATTTGTTCA 460 283 1528 Antisense
Sequence Source Affymetrix Proprietary Database