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[188977_s_at] arylsulfatase

Description D1014.1 /REP_DB=WormBase Gene ID /WP=CE07003 /TR=Q18924 /GB=AAA96290.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=arylsulfatase
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 03      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 24      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1534
1 2 3 4 range
A 1952
(3)
P 		755.2
(-1.7)
P 		417.9
(-3)
P 		454.1
(-2.9)
P 		1534
B 1634.2
(3)
P 		698.6
(-1.8)
P 		471.6
(-2.9)
P 		453.1
(-3)
P 		1181
C 1946.7
(3)
P 		706.7
(-2.2)
P 		503.5
(-3)
P 		528.1
(-2.9)
P 		1443
avr 1844.3
(3) 		720.2
(-1.9) 		464.3
(-3) 		478.4
(-2.9) 		1380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 577
1 2 3 4 5 6 range
A 593
(3)
P 		549
(2.2)
P 		523.5
(1.8)
P 		397.2
(-0.5)
P 		253.6
(-3)
P 		340.8
(-1.5)
P 		339
B 830.4
(3)
P 		603.6
(0.4)
P 		552.6
(-0.2)
P 		448
(-1.4)
P 		338.4
(-2.6)
P 		305.2
(-3)
P 		525
C 667.5
(3)
P 		669
(3)
P 		416.4
(-0.8)
P 		436.9
(-0.5)
P 		273.3
(-3)
P 		393.2
(-1.2)
P 		396
avr 697
(3) 		607.2
(1.7) 		497.5
(0.1) 		427.4
(-1) 		288.4
(-3) 		346.4
(-2.1) 		409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 644
1 2 3 4 range
A 710.7
(3)
P 		163.9
(-2.1)
P 		109.3
(-2.6)
P 		66.5
(-3)
P 		644
B 521.1
(3)
P 		172.5
(-1.9)
P 		109.3
(-2.8)
P 		96.6
(-3)
P 		425
C 644.4
(3)
P 		203.2
(-1.8)
P 		175.5
(-2.1)
P 		89.1
(-3)
P 		555
avr 625.4
(3) 		179.9
(-1.9) 		131.4
(-2.5) 		84.1
(-3) 		541

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 109.3
(-1.3)
P 		195.3
(3)
P 		114
(-1.1)
P 		100.7
(-1.8)
P 		76.5
(-3)
P 		83
(-2.7)
P 		119
B 289
(3)
P 		200.9
(-0)
P 		134.2
(-2.3)
P 		118.7
(-2.8)
P 		137.5
(-2.2)
P 		113.8
(-3)
P 		175
C 247.4
(3)
P 		204.1
(1.4)
P 		106
(-2.3)
P 		87.9
(-3)
P 		88.4
(-3)
P 		131.6
(-1.4)
P 		160
avr 215.2
(3) 		200.1
(2.2) 		118.1
(-2.1) 		102.4
(-2.9) 		100.8
(-3) 		109.5
(-2.5) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188977_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11558
Sequence Type Exemplar sequence
Representative Public ID D1014.1 NCBI
Target Description D1014.1 /REP_DB=WormBase Gene ID /WP=CE07003 /TR=Q18924 /GB=AAA96290.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=arylsulfatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072701 NCBI Caenorhabditis elegans D1014.1 (arylsulfatase) mRNA, complete cds. 11/11 None
SNAP00000033156 ENSEMBL cdna:SNAP chromosome:CEL140:V:8161433:8162175:1 11/11 None
GENEFINDER00000033172 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8161409:8162175:1 11/11 None
D1014.1 ENSEMBL cdna:known chromosome:CEL140:V:8160337:8162435:1 gene:D1014.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8160337-8162176(+) 100.0 100.0
Public Domain and Genome References
Gene Title arylsulfatase
Gene Symbol sul-2
Ensembl D1014.1
Entrez Gene 179194 Entrez gene
SwissProt Q18924 EMBL-EBI
WormBase CE07003 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17414.1.S1_AT similar to Steryl-sulfatase precursor (Steroid sulfatase) (Steryl-sulfate sulfohydrolase) (Arylsulfatase C) (ASC) cfa
CHICKEN:GGAAFFX.10660.1.S1_AT similar to arylsulfatase gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8484 sulfuric ester hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505102 D1014.1 [Caenorhabditis elegans] gb|AAA96290.1| Sulfatase domain protein protein 2 [Caenorhabditis elegans] 0.0
blast CAE66119 Hypothetical protein CBG11339 [Caenorhabditis briggsae] 0.0
blast NP_505102 D1014.1 [Caenorhabditis elegans] gb|AAA96290.1| Sulfatase domain protein protein 2 [Caenorhabditis elegans] 1.0E-115
blast CAE66119 Hypothetical protein CBG11339 [Caenorhabditis briggsae] 1.0E-103
blast CAA34667 arylsulfatase [Hemicentrotus pulcherrimus] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000917 EMBL-EBI Sulfatase 7.8E-40
Sequence
Target Sequence 
>C. ELEGANS:188977_S_AT
gaagcactccgttctgacggaattgatatctctgacgaattgcgtggtgagagtgaagat
gtggaaggaagcctcggaaaggctcgtccgatcatctactactgtaatactcatctgatg
gctattaggatgggagactacaaagttcactacaaaacatctccaatcttctttaataat
tcagttgatccaaatcttgattatttctgtccaaatggaaaaccaaagtctgattggtac
gtttcacaagtctgtcctgatgagcatctacaaaaacattatcctccacttgttttcgat
cttattcgtgatccatatgagcagtatccattgcaaaatactgtaaaatcacaagagata
agattccaagctatgcagcggctgtctgaacacaaatcgtcgctggtcaaagttaaaaat
gtgctcggaagctacaataaaacattgataccttgctgcaatccgccaagttgcaaatgt
gacaaattatcaaggcccacagaatttgacgaaagtcggccagattatgttggtctggtg
cctgatcttgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCACTCCGTTCTGACGGAATTG 508 341 784 Antisense
GGAAGCCTCGGAAAGGCTCGTCCGA 486 529 850 Antisense
TCGTCCGATCATCTACTACTGTAAT 393 603 867 Antisense
GTCTGATTGGTACGTTTCACAAGTC 437 469 1011 Antisense
ACAAGTCTGTCCTGATGAGCATCTA 591 113 1029 Antisense
TCTACAAAAACATTATCCTCCACTT 694 609 1050 Antisense
CTCCACTTGTTTTCGATCTTATTCG 328 235 1067 Antisense
GATTCCAAGCTATGCAGCGGCTGTC 612 433 1145 Antisense
GTCTGAACACAAATCGTCGCTGGTC 264 471 1167 Antisense
GACGAAAGTCGGCCAGATTATGTTG 50 381 1291 Antisense
GTTGGTCTGGTGCCTGATCTTGAAA 317 437 1312 Antisense
Sequence Source Affymetrix Proprietary Database