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[188976_s_at] casein kinase

Description H05L14.1 /REP_DB=WormBase Gene ID /WP=CE16168 /TR=O18107 /GB=CAA99932.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=casein kinase
Cluster 6grp_total > 77      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 62.9
(-3)
A 		63.4
(-2.9)
A 		83.4
(0.1)
A 		102.2
(3)
P 		39
B 82
(3)
A 		58
(0.1)
A 		32.4
(-3)
A 		75.5
(2.2)
A 		50
C 58.6
(-3)
A 		87
(-0.5)
A 		66.2
(-2.3)
A 		126.5
(3)
P 		68
avr 67.8
(-2) 		69.5
(-1.7) 		60.7
(-3) 		101.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 48.7
(-2.4)
A 		28.3
(-3)
A 		101.3
(-1)
A 		46.5
(-2.5)
A 		192
(1.5)
A 		246.4
(3)
P 		218
B 71.5
(-2.9)
A 		69.3
(-3)
A 		100
(-1.9)
P 		91.4
(-2.2)
A 		99.6
(-1.9)
P 		232.5
(3)
P 		163
C 51.4
(-2.9)
A 		119.1
(-1.3)
A 		48.2
(-3)
A 		95
(-1.9)
A 		115
(-1.4)
P 		303.7
(3)
P 		256
avr 57.2
(-3) 		72.2
(-2.6) 		83.2
(-2.2) 		77.6
(-2.4) 		135.5
(-0.7) 		260.9
(3) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 22.9
(3)
A 		13.8
(-3)
A 		21.8
(2.3)
A 		15
(-2.2)
P 		9
B 26.2
(3)
A 		14.3
(-0.8)
A 		7.5
(-3)
A 		16.1
(-0.2)
A 		19
C 19.4
(-3)
A 		25
(3)
A 		23.1
(1)
A 		21.3
(-1)
P 		6
avr 22.8
(3) 		17.7
(-2.8) 		17.5
(-3) 		17.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 9
(-3)
A 		10.1
(-2.9)
A 		22.1
(-1.5)
A 		11.8
(-2.7)
A 		57.9
(2.8)
A 		60
(3)
P 		51
B 24.9
(-2.8)
A 		23.1
(-3)
A 		24.3
(-2.9)
P 		24.2
(-2.9)
A 		40.5
(-1.4)
P 		86.7
(3)
P 		64
C 19.1
(-2.5)
A 		36.3
(-1.4)
A 		12.3
(-3)
A 		19.1
(-2.5)
A 		37.2
(-1.3)
P 		101.7
(3)
P 		89
avr 17.7
(-3) 		23.2
(-2.5) 		19.6
(-2.8) 		18.4
(-2.9) 		45.2
(-0.5) 		82.8
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188976_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1583
Sequence Type Exemplar sequence
Representative Public ID H05L14.1 NCBI
Target Description H05L14.1 /REP_DB=WormBase Gene ID /WP=CE16168 /TR=O18107 /GB=CAA99932.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=casein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059797 NCBI Caenorhabditis elegans H05L14.1 (H05L14.1) mRNA, complete cds. 11/11 None
H05L14.1 ENSEMBL cdna:known chromosome:CEL140:I:7980599:7985179:-1 gene:H05L14.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000061 4/11 Cross Hyb Matching Probes None
SNAP00000016363 6/11 Cross Hyb Matching Probes None
GENEFINDER00000016368 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7980595-7985056(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein kinase
Ensembl H05L14.1
Entrez Gene 172575 Entrez gene
SwissProt O18107 EMBL-EBI
WormBase CE16168 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99932 Hypothetical protein H05L14.1 [Caenorhabditis elegans] emb|CAB16921.1| Hypothetical protein H05L14.1 [Caenorhabditis elegans] ref|NP_492198.1| H05L14.1 [Caenorhabditis elegans] 0.0
blast CAE63709 Hypothetical protein CBG08226 [Caenorhabditis briggsae] 0.0
blast CAE63708 Hypothetical protein CBG08225 [Caenorhabditis briggsae] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.0095
Pfam IPR000719 EMBL-EBI Protein kinase 6.5E-6
Pfam IPR000719 EMBL-EBI Protein kinase 0.0019
Sequence
Target Sequence 
>C. ELEGANS:188976_S_AT
gtgatcttcacaatcttggatatcttcatcgtgacataaagccagccaactttgccgttg
gtgttggagctaaagagtcaaccgtcttcatgcttgatttcggaattggaagaagttatt
tggatccgaaaaccaaacagcacagggctccacgtaaaaaagttaagttcttgggaacac
ttcgatatgcatcacgagcctgtatgctagaagtagatcaaggacgcaaagatgacttgg
aatgctggatttatatggtgtttgatatttttgatccgaaaaatggcgtctcgtggaaaa
agcagagagatcgagtcaaaattcgagaggctaagcaattatttttcgatggtaaagctc
aatacgactatgctccaatcagtttgagaccaattatcatttacatcaacagtcttcaat
tccaaacaactcccgaatacgcaaatcttgtcaagactttatatacatcgtcatctgctt
ctggttatccaattcatagtcttgatgacggtggatgggttggaaaactaaagaaagagg
caaagtcgaaaatggagaaaaagactgcacgctttggtgatagctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATCTTCACAATCTTGGATATCT 707 483 1772 Antisense
CATAAAGCCAGCCAACTTTGCCGTT 485 211 1806 Antisense
CTTTGCCGTTGGTGTTGGAGCTAAA 631 219 1821 Antisense
AGAGTCAACCGTCTTCATGCTTGAT 399 69 1845 Antisense
AAACAGCACAGGGCTCCACGTAAAA 583 125 1906 Antisense
TTCGATATGCATCACGAGCCTGTAT 338 693 1952 Antisense
GCTCAATACGACTATGCTCCAATCA 543 299 2128 Antisense
TTTACATCAACAGTCTTCAATTCCA 491 673 2171 Antisense
AACTCCCGAATACGCAAATCTTGTC 475 141 2199 Antisense
GTCATCTGCTTCTGGTTATCCAATT 351 465 2241 Antisense
GACTGCACGCTTTGGTGATAGCTCT 295 375 2334 Antisense
Sequence Source Affymetrix Proprietary Database