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[188975_at] amine oxidase

Description C15A11.7 /REP_DB=WormBase Gene ID /WP=CE08175 /TR=Q93211 /GB=CAB01964.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=amine oxidase
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 30      6grp_total > 38      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2204
1 2 3 4 range
A 2324.3
(3)
P 		566.3
(-2.9)
P 		544.1
(-3)
P 		1570.2
(0.5)
P 		1780
B 2657.7
(3)
P 		539
(-2.8)
P 		454.2
(-3)
P 		1307.4
(-0.7)
P 		2204
C 2209.3
(3)
P 		518.2
(-3)
P 		540.5
(-2.9)
P 		1557.9
(0.7)
P 		1691
avr 2397.1
(3) 		541.2
(-2.9) 		512.9
(-3) 		1478.5
(0.1) 		1884

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 989
1 2 3 4 5 6 range
A 1377.8
(3)
P 		762.6
(-0.8)
P 		413.1
(-3)
P 		653
(-1.5)
P 		776.1
(-0.7)
P 		970
(0.5)
P 		965
B 1257
(3)
P 		818
(-0.8)
P 		557
(-3)
P 		567.9
(-2.9)
P 		656.7
(-2.1)
P 		999.6
(0.8)
P 		700
C 1141.6
(3)
P 		830.1
(0.5)
P 		389
(-3)
P 		703
(-0.5)
P 		596.8
(-1.3)
P 		1049
(2.3)
P 		753
avr 1258.8
(3) 		803.6
(-0.4) 		453
(-3) 		641.3
(-1.6) 		676.5
(-1.3) 		1006.2
(1.1) 		806
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 742
1 2 3 4 range
A 846.3
(3)
P 		122.9
(-3)
P 		142.2
(-2.8)
P 		229.8
(-2.1)
P 		723
B 847.5
(3)
P 		133.1
(-2.8)
P 		105.3
(-3)
P 		278.6
(-1.6)
P 		742
C 731.4
(3)
P 		149
(-3)
P 		188.4
(-2.6)
P 		262.7
(-1.8)
P 		582
avr 808.4
(3) 		135
(-3) 		145.3
(-2.9) 		257
(-1.9) 		673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 254
(2.4)
P 		271.2
(3)
P 		90
(-3)
P 		165.6
(-0.5)
P 		234.2
(1.8)
P 		236.2
(1.8)
P 		181
B 437.4
(3)
P 		272.3
(-0.3)
P 		135.3
(-3)
P 		150.4
(-2.7)
P 		266.8
(-0.4)
P 		372.8
(1.7)
P 		302
C 423.2
(3)
P 		253.3
(-0.1)
P 		99
(-3)
P 		141.4
(-2.2)
P 		193.1
(-1.3)
P 		351.2
(1.7)
P 		324
avr 371.5
(3) 		265.6
(0.6) 		108.1
(-3) 		152.5
(-2) 		231.4
(-0.2) 		320.1
(1.8) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1426
Sequence Type Exemplar sequence
Representative Public ID C15A11.7 NCBI
Target Description C15A11.7 /REP_DB=WormBase Gene ID /WP=CE08175 /TR=Q93211 /GB=CAB01964.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=amine oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059691 NCBI Caenorhabditis elegans C15A11.7 (C15A11.7) mRNA, complete cds. 11/11 None
SNAP00000007972 ENSEMBL cdna:SNAP chromosome:CEL140:I:7413169:7416256:1 9/11 None
GENEFINDER00000007977 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7413169:7431115:1 11/11 None
C15A11.7 ENSEMBL cdna:known chromosome:CEL140:I:7413159:7416640:1 gene:C15A11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7413099-7416187(+) 100.0 100.0
Public Domain and Genome References
Gene Title amine oxidase
Ensembl C15A11.7
Entrez Gene 172496 Entrez gene
SwissProt Q93211 EMBL-EBI
WormBase CE08175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01964 Hypothetical protein C15A11.7 [Caenorhabditis elegans] ref|NP_492092.1| C15A11.7 [Caenorhabditis elegans] 0.0
blast CAE66609 Hypothetical protein CBG11935 [Caenorhabditis briggsae] 0.0
blast CAE66609 Hypothetical protein CBG11935 [Caenorhabditis briggsae] 1.0E-169
blast CAB01963 Hypothetical protein C15A11.4 [Caenorhabditis elegans] ref|NP_492089.1| C15A11.4 [Caenorhabditis elegans] 1.0E-156
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492092.1 9 54-71,92-114,129-146,153-170,185-202,215-237,290-312,319-337,341-363
C15A11.7 9 54-71,92-114,129-146,153-170,185-202,215-237,290-312,319-337,341-363
SNAP00000007972 9 54-71,92-114,129-146,153-170,185-202,215-237,265-287,294-312,316-338
GENEFINDER00000007977 10 54-71,92-114,129-146,153-170,185-202,215-237,259-281,293-315,319-336,341-363
Sequence
Target Sequence 
>C. ELEGANS:188975_AT
ggacatcatttgcatttgctctcggaattttgaatgctcagaaaaagcgaccgacatttg
ttaaaattcctgaattttgtttctggaaaggtctgcttctgtttctaacaggtgttgttg
gaggaatttttgatgcatttgctggaagtggaattgatatttgtatgttttcaacgctaa
cccttttgttccgggttagtgagaagacagcgacacctacaacaatgatattaaaaggtg
ttgtatcaatgttcgggttttactacagagctgttcaaatgggtgatatatcggaaattg
catggaaatattttacatgcacaataccagttgttgcgacaatggctcccattggctcat
ttctgggatctcatcttcatcgtcaagtaattgcagctttgatttacattcttgaagcag
cttcgcttgttggattcttattgaccaaaccaacatggtttcttatcatcatgtcagttg
tcataattggctgtggatttgtctttttctcagtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACATCATTTGCATTTGCTCTCGG 514 523 581 Antisense
TATGTTTTCAACGCTAACCCTTTTG 704 655 744 Antisense
GAGAAGACAGCGACACCTACAACAA 697 391 781 Antisense
GTTCGGGTTTTACTACAGAGCTGTT 277 443 831 Antisense
CAGTTGTTGCGACAATGGCTCCCAT 462 205 908 Antisense
GCTCCCATTGGCTCATTTCTGGGAT 408 299 925 Antisense
ATTGCAGCTTTGATTTACATTCTTG 129 7 970 Antisense
CAGCTTCGCTTGTTGGATTCTTATT 192 205 998 Antisense
GGATTCTTATTGACCAAACCAACAT 83 509 1012 Antisense
GTTTCTTATCATCATGTCAGTTGTC 247 451 1038 Antisense
TGTGGATTTGTCTTTTTCTCAGTAA 500 555 1072 Antisense
Sequence Source Affymetrix Proprietary Database