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[188974_at]

Description C31B8.3 /REP_DB=WormBase Gene ID /WP=CE17481 /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor (ST.LOUIS) TR:O16903 protein_id:AAG23981.1
Cluster 6grp_total > 95      4grp_total > 10      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 32.6
(-3)
A 		53.2
(-2.4)
A 		37.2
(-2.9)
A 		252.1
(3)
P 		220
B 40.1
(-3)
A 		66.3
(-2)
A 		53.9
(-2.5)
A 		198.8
(3)
P 		159
C 76.2
(-1.8)
A 		66.7
(-2)
A 		29.7
(-3)
A 		260.3
(3)
P 		231
avr 49.6
(-2.7) 		62.1
(-2.3) 		40.3
(-3) 		237.1
(3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 35.6
(-3)
A 		37.7
(-2.8)
A 		57.9
(-0.8)
A 		53.8
(-1.2)
A 		96.4
(3)
A 		54.6
(-1.1)
A 		61
B 42
(-0.9)
A 		55.9
(0.2)
A 		15.5
(-3)
A 		40.3
(-1)
A 		66.6
(1)
A 		91.6
(3)
P 		76
C 43.9
(-2)
A 		86.2
(1.2)
A 		30.1
(-3)
A 		106.5
(2.8)
A 		77.9
(0.6)
A 		109.8
(3)
P 		80
avr 40.5
(-2.3) 		59.9
(0) 		34.5
(-3) 		66.9
(0.8) 		80.3
(2.4) 		85.3
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 11.9
(-2.5)
A 		11.5
(-2.6)
A 		9.7
(-3)
A 		36.9
(3)
P 		27
B 12.8
(-2.9)
A 		16.4
(-2.2)
A 		12.5
(-3)
A 		42.4
(3)
P 		30
C 25.2
(-0.3)
A 		19.2
(-1.4)
A 		10.3
(-3)
A 		43.9
(3)
P 		34
avr 16.6
(-1.9) 		15.7
(-2) 		10.8
(-3) 		41.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 6.6
(-3)
A 		13.4
(-1.2)
A 		12.6
(-1.4)
A 		13.7
(-1.1)
A 		29.1
(3)
A 		13.3
(-1.2)
A 		23
B 14.6
(-0.9)
A 		18.6
(-0.1)
A 		3.8
(-3)
A 		10.7
(-1.6)
A 		27.1
(1.6)
A 		34.2
(3)
P 		30
C 16.3
(-1.2)
A 		26.3
(0.8)
A 		7.7
(-3)
A 		21.4
(-0.2)
A 		25.2
(0.6)
A 		36.8
(3)
P 		29
avr 12.5
(-1.7) 		19.4
(0.4) 		8
(-3) 		15.3
(-0.8) 		27.1
(2.7) 		28.1
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15881
Sequence Type Exemplar sequence
Representative Public ID C31B8.3 NCBI
Target Description C31B8.3 /REP_DB=WormBase Gene ID /WP=CE17481 /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor (ST.LOUIS) TR:O16903 protein_id:AAG23981.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C31B8.3 ENSEMBL cdna:pseudogene chromosome:CEL140:V:2914075:2915999:1 gene:C31B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2914074-2915999(+) 100.0 100.0
Public Domain and Genome References
Ensembl C31B8.3
Sequence
Target Sequence 
>C. ELEGANS:188974_AT
aatggtgccggttactgtttgttatagcattgtattctctggctgcagcattgcctacac
ctgtttttctacatcttcctgaccaagaaaccggaaaactgaaaaaccagtgtattccac
gtgatcttataaaccatcctaatttctttctgcttgatgacggaggatattatattgtga
tatgtgccatgttcacaattgtttttattggttttcaaatacttctgcaagttgggctaa
tttgtcgggagctcttcaaacattcacatgtttccaaaagtacacatagactgcaaaagc
aatttttcattgcaatgagcttacaaatagttattccactccttgtcttagtttttccag
tgctttattttgctttttcggtttcttcaaattattataaccaaggcgcaaataatctgg
catttttaatagtttcattgcacggagtcacgacaacattgatgatgctcatggttcaca
cgccatatagaaattcaattttcgaaatgctaaatttgaaatccgcaaaccagtctggtg
accacactcgccgtatttggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTGCCGGTTACTGTTTGTTAT 420 163 413 Antisense
TATTCTCTGGCTGCAGCATTGCCTA 386 663 445 Antisense
TTTTTCTACATCTTCCTGACCAAGA 132 675 476 Antisense
ATTTCTTTCTGCTTGATGACGGAGG 234 15 554 Antisense
GTCGGGAGCTCTTCAAACATTCACA 22 473 656 Antisense
AAATAGTTATTCCACTCCTTGTCTT 342 117 737 Antisense
TCCTTGTCTTAGTTTTTCCAGTGCT 649 589 752 Antisense
GTTTCATTGCACGGAGTCACGACAA 528 447 844 Antisense
TGATGATGCTCATGGTTCACACGCC 292 567 872 Antisense
CAAACCAGTCTGGTGACCACACTCG 354 191 938 Antisense
TGACCACACTCGCCGTATTTGGAAA 227 569 951 Antisense
Sequence Source Affymetrix Proprietary Database