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[188973_at]

Description K11D9.2A /REP_DB=WormBase Gene ID /WP=CE18884 /TR=Q9XTG6 /GB=CAB07262.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=E1-E2 ATPases
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_high_8_8 > 51      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 52      6grp_highest_sub > Cu      6grp_cgc > 02      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 756.8
(3)
P 		711.5
(-1.1)
M 		690.2
(-3)
M 		726.1
(0.2)
P 		67
B 754.4
(3)
P 		692.6
(-3)
P 		696
(-2.7)
A 		713.3
(-1)
P 		62
C 706
(1.1)
M 		836.1
(3)
P 		751.9
(1.8)
P 		416.7
(-3)
P 		419
avr 739.1
(2.6) 		746.7
(3) 		712.7
(1.4) 		618.7
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 747
1 2 3 4 5 6 range
A 726.3
(2.6)
P 		544
(0.4)
P 		339.2
(-2.1)
P 		265.7
(-3)
P 		492.7
(-0.2)
P 		755.7
(3)
P 		490
B 855
(3)
P 		477.7
(-2)
P 		404.8
(-3)
P 		495.3
(-1.8)
P 		520.2
(-1.5)
P 		528
(-1.4)
P 		450
C 971.1
(3)
P 		520.2
(-0.6)
P 		329.8
(-2.2)
P 		405.2
(-1.5)
P 		650.5
(0.4)
P 		224.3
(-3)
P 		747
avr 850.8
(3) 		514
(-1.1) 		357.9
(-3) 		388.7
(-2.6) 		554.5
(-0.6) 		502.7
(-1.2) 		493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 275.6
(3)
P 		154.4
(-1.3)
M 		180.4
(-0.4)
M 		106.3
(-3)
P 		169
B 240.6
(3)
P 		171.1
(-1.7)
P 		161.3
(-2.4)
A 		152
(-3)
P 		89
C 233.7
(2.1)
M 		240.4
(2.3)
P 		262
(3)
P 		70.3
(-3)
P 		192
avr 250
(3) 		188.6
(0.4) 		201.2
(0.9) 		109.5
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 133.9
(0.2)
P 		193.5
(3)
P 		73.9
(-2.7)
P 		67.4
(-3)
P 		148.7
(0.9)
P 		184
(2.5)
P 		126
B 297.5
(3)
P 		159
(-1.2)
P 		98.3
(-3)
P 		131.2
(-2)
P 		211.4
(0.4)
P 		196.9
(-0)
P 		199
C 359.9
(3)
P 		158.7
(-1.2)
P 		83.9
(-2.8)
P 		81.5
(-2.9)
P 		210.5
(-0.1)
P 		75.1
(-3)
P 		285
avr 263.8
(3) 		170.4
(-0.1) 		85.4
(-3) 		93.4
(-2.7) 		190.2
(0.5) 		152
(-0.8) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7422
Sequence Type Exemplar sequence
Representative Public ID K11D9.2A NCBI
Target Description K11D9.2A /REP_DB=WormBase Gene ID /WP=CE18884 /TR=Q9XTG6 /GB=CAB07262.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=E1-E2 ATPases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066985 NCBI Caenorhabditis elegans SERCA (Sarco-Endoplasmic Reticulum Calcium ATPase) family member (sca-1) (sca-1) mRNA, complete cds. 11/11 None
SNAP00000035704 ENSEMBL cdna:SNAP chromosome:CEL140:III:10812828:10817080:-1 11/11 None
GENEFINDER00000035705 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10812828:10818542:-1 11/11 None
K11D9.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:10811808:10816721:-1 gene:K11D9.2 11/11 None
K11D9.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:10811808:10816722:-1 gene:K11D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176512 2 1 NM_066984 174094_at (11)
NM_066985 174028_at (11), 188973_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10812823-10816683(-) 100.0 100.0
Public Domain and Genome References
Ensembl K11D9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07262 Hypothetical protein K11D9.2a [Caenorhabditis elegans] ref|NP_499386.1| SERCA (Sarco-Endoplasmic Reticulum Calcium ATPase) family member (sca-1) [Caenorhabditis elegans] emb|CAA09985.1| calcium ATPase [Caenorhabditis elegans] 0.0
blast CAE71397 Hypothetical protein CBG18305 [Caenorhabditis briggsae] 0.0
blast CAB07263 Hypothetical protein K11D9.2b [Caenorhabditis elegans] ref|NP_499385.3| SERCA (Sarco-Endoplasmic Reticulum Calcium ATPase) family member (sca-1) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A1A2_HUMAN (P50993) Sodium/potassium-transporting ATPase alpha-2 chain precursor (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 2.3E-81
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 1.0E-126
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.9E-15
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 9.2E-31
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 2.3E-81
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 1.0E-126
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.9E-15
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 9.2E-31
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 2.3E-81
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 1.0E-126
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.9E-15
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 2.0E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499386.1 9 59-77,87-109,262-281,301-323,762-784,838-860,933-955,965-987,1007-1029
K11D9.2a.1 9 59-77,87-109,262-281,301-323,762-784,838-860,933-955,965-987,1007-1029
K11D9.2a.2 9 59-77,87-109,262-281,301-323,762-784,838-860,933-955,965-987,1007-1029
SNAP00000035704 9 108-126,136-158,311-330,350-372,811-833,887-909,982-1004,1014-1036,1056-1078
GENEFINDER00000035705 9 267-285,295-317,470-489,509-531,970-992,1046-1068,1141-1163,1173-1195,1215-1237
Sequence
Target Sequence 
>C. ELEGANS:188973_AT
gaaactacatcgacggtaagccggagacggtcggcgcgaaggcacgtagtgccatctcgc
tgctcgcctgggtgtctgtgacgctcgcctactttgcgtggatgttgggcccgtacgccg
agctcattaaccatgcgctcgtcggtccatctgtcgatccgtcgaaattcgacgcggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTACATCGACGGTAAGCCGGA 572 355 2981 Antisense
GTAAGCCGGAGACGGTCGGCGCGAA 321 459 2996 Antisense
TCGGCGCGAAGGCACGTAGTGCCAT 306 605 3011 Antisense
AAGGCACGTAGTGCCATCTCGCTGC 367 161 3019 Antisense
GCTCGCCTACTTTGCGTGGATGTTG 210 299 3063 Antisense
TACTTTGCGTGGATGTTGGGCCCGT 249 645 3070 Antisense
TTGCGTGGATGTTGGGCCCGTACGC 651 697 3074 Antisense
GTACGCCGAGCTCATTAACCATGCG 316 455 3093 Antisense
CGAGCTCATTAACCATGCGCTCGTC 242 251 3099 Antisense
GTCCATCTGTCGATCCGTCGAAATT 453 475 3125 Antisense
GATCCGTCGAAATTCGACGCGGTTG 483 413 3136 Antisense
Sequence Source Affymetrix Proprietary Database