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[188972_at] 7TM chemoreceptor, str family

Description F07C4.1 /REP_DB=WormBase Gene ID /WP=CE09200 /TR=P91217 /GB=AAG24044.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 47      4grp_total > 44      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 48.1
(3)
A 		4.5
(-3)
A 		36.2
(1.4)
A 		6.1
(-2.8)
A 		44
B 22.5
(-3)
A 		55.5
(3)
P 		29.2
(-1.8)
A 		24.5
(-2.6)
A 		33
C 40
(1.6)
A 		49.5
(3)
A 		9.2
(-3)
A 		27.6
(-0.3)
A 		40
avr 36.9
(3) 		36.5
(2.9) 		24.9
(-1.1) 		19.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 53.4
(3)
A 		17
(-1.9)
A 		26.4
(-0.6)
A 		9.8
(-2.9)
A 		8.9
(-3)
A 		28.7
(-0.3)
A 		45
B 12
(-3)
A 		44.3
(3)
A 		12.8
(-2.9)
A 		31.2
(0.6)
A 		29.2
(0.2)
M 		28.7
(0.1)
A 		32
C 3.4
(-3)
A 		11.6
(-1.9)
A 		16.9
(-1.2)
A 		48.7
(3)
A 		6.1
(-2.6)
A 		27.5
(0.2)
A 		45
avr 22.9
(0.2) 		24.3
(0.8) 		18.7
(-1.4) 		29.9
(3) 		14.7
(-3) 		28.3
(2.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.5
(3)
A 		1
(-3)
A 		9.5
(0.1)
A 		0.9
(-3)
A 		17
B 7.2
(-1.6)
A 		13.7
(3)
P 		6.8
(-1.9)
A 		5.2
(-3)
A 		9
C 13.2
(2.5)
A 		14.2
(3)
A 		3.2
(-3)
A 		4.6
(-2.2)
A 		11
avr 12.6
(3) 		9.6
(1) 		6.5
(-1.1) 		3.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.8
(3)
A 		6
(-0.1)
A 		5.8
(-0.3)
A 		2.5
(-3)
A 		2.7
(-2.8)
A 		7
(0.7)
A 		7
B 4.2
(-2.4)
A 		14.7
(3)
A 		3.1
(-3)
A 		8.3
(-0.3)
A 		11.9
(1.6)
M 		10.7
(0.9)
A 		12
C 1.3
(-3)
A 		3.5
(-1.4)
A 		4.3
(-0.9)
A 		9.8
(3)
A 		2
(-2.5)
A 		9.2
(2.6)
A 		9
avr 5.1
(-2.1) 		8.1
(1.8) 		4.4
(-3) 		6.9
(0.3) 		5.5
(-1.6) 		9
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11962
Sequence Type Exemplar sequence
Representative Public ID F07C4.1 NCBI
Target Description F07C4.1 /REP_DB=WormBase Gene ID /WP=CE09200 /TR=P91217 /GB=AAG24044.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072579 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-47) (str-47) mRNA, complete cds. 11/11 None
GENEFINDER00000003405 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7648622:7649661:1 11/11 None
F07C4.1 ENSEMBL cdna:known chromosome:CEL140:V:7648346:7649661:1 gene:F07C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7648346-7649662(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-47
Ensembl F07C4.1
Entrez Gene 184129 Entrez gene
SwissProt P91217 EMBL-EBI
WormBase CE09200 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504980 Seven TM Receptor family member (str-47) [Caenorhabditis elegans] gb|AAG24044.1| Seven tm receptor protein 47 [Caenorhabditis elegans] 1.0E-175
blast NP_504980 Seven TM Receptor family member (str-47) [Caenorhabditis elegans] gb|AAG24044.1| Seven tm receptor protein 47 [Caenorhabditis elegans] 1.0E-119
blast CAE61805 Hypothetical protein CBG05772 [Caenorhabditis briggsae] 5.0E-90
blast AAB00693 Seven tm receptor protein 48 [Caenorhabditis elegans] ref|NP_501116.1| Seven TM Receptor family member (str-48) [Caenorhabditis elegans] 5.0E-88
blast CAE61805 Hypothetical protein CBG05772 [Caenorhabditis briggsae] 5.0E-58
blast AAB00693 Seven tm receptor protein 48 [Caenorhabditis elegans] ref|NP_501116.1| Seven TM Receptor family member (str-48) [Caenorhabditis elegans] 4.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504980.1 7 15-37,44-66,91-113,133-155,198-220,244-266,281-303
F07C4.1 7 15-37,44-66,91-113,133-155,198-220,244-266,281-303
GENEFINDER00000003405 5 4-26,39-61,106-128,152-174,189-211
Sequence
Target Sequence 
>C. ELEGANS:188972_AT
ggtgtagcgcttatgatttttggattatcagatgaatattcagatgagtatatgatggtg
gaaatgttgaacaagtatgagttggccattaaagattttccacgattcatcatagtaatc
tatggagccgacggttcactacgttatcgaaatgtgatgtacttagtgagtgctggagtt
gacgtcgcaattcagtacctcctaattattttctgcggaatcaaaatgcatttggtcatg
aaccaaggattcaaaaatgtttcagtagcgaacaagaagattcacaaacaatttttgcgt
gctcttatagtacaaaccattgttcctactgttttgtttgttttccctgcagtctttgtg
ttgctgagcccaatattagatctggaaatgagttttcagacaggatggatatatgctctt
ataagcatgtttccttcgattgactctattggcttcatgtattttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTAGCGCTTATGATTTTTGGAT 187 501 451 Antisense
GTAATCTATGGAGCCGACGGTTCAC 335 461 565 Antisense
GCCGACGGTTCACTACGTTATCGAA 174 285 577 Antisense
AGTTGACGTCGCAATTCAGTACCTC 596 63 627 Antisense
AGTACCTCCTAATTATTTTCTGCGG 84 61 644 Antisense
TGCGTGCTCTTATAGTACAAACCAT 44 583 746 Antisense
ACCATTGTTCCTACTGTTTTGTTTG 541 85 766 Antisense
ACTGTTTTGTTTGTTTTCCCTGCAG 219 97 778 Antisense
TTCCCTGCAGTCTTTGTGTTGCTGA 367 697 793 Antisense
GTTTCCTTCGATTGACTCTATTGGC 322 451 879 Antisense
GACTCTATTGGCTTCATGTATTTTG 39 375 892 Antisense
Sequence Source Affymetrix Proprietary Database