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[188971_s_at]

Description K11D9.2B /REP_DB=WormBase Gene ID /WP=CE18885 /TR=Q9XU13 /GB=CAB07263.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=E1-E2 ATPases
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 05      6grp_total > 27      4grp_total > 13      6grp_highest_sub > De      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10605
1 2 3 4 range
A 11813.1
(0.2)
P 		6965.5
(-2.6)
P 		6237.1
(-3)
P 		16841.9
(3)
P 		10605
B 11610.4
(0.7)
P 		6788.1
(-2.7)
P 		6313.3
(-3)
P 		15016.2
(3)
P 		8703
C 9880
(-0.3)
P 		7042.3
(-2.4)
P 		6294.3
(-3)
P 		14368.6
(3)
P 		8074
avr 11101.2
(0.2) 		6932
(-2.6) 		6281.6
(-3) 		15408.9
(3) 		9127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5292
1 2 3 4 5 6 range
A 10187.2
(3)
P 		8297
(0.7)
P 		5318.7
(-3)
P 		5610.1
(-2.6)
P 		6011.2
(-2.1)
P 		8086.4
(0.4)
P 		4869
B 8567.5
(3)
P 		7394.2
(1.1)
P 		5300.8
(-2.4)
P 		5909.7
(-1.4)
P 		4906.2
(-3)
P 		6112.9
(-1)
P 		3661
C 9445.8
(3)
P 		7350.8
(0.2)
P 		7083.3
(-0.1)
P 		4895.2
(-3)
P 		5996
(-1.5)
P 		5575.1
(-2.1)
P 		4551
avr 9400.2
(3) 		7680.7
(0.4) 		5900.9
(-2.3) 		5471.7
(-3) 		5637.8
(-2.7) 		6591.5
(-1.3) 		3929
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2838
1 2 3 4 range
A 4301.2
(3)
P 		1512
(-3)
P 		1630.5
(-2.7)
P 		2465.3
(-0.9)
P 		2789
B 3702.5
(3)
P 		1676.5
(-2.4)
P 		1462.9
(-3)
P 		3200
(1.7)
P 		2240
C 3270.6
(3)
P 		2024.7
(-3)
P 		2193.8
(-2.2)
P 		2422.8
(-1.1)
P 		1246
avr 3758.1
(3) 		1737.7
(-3) 		1762.4
(-2.9) 		2696
(-0.2) 		2020

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2517
1 2 3 4 5 6 range
A 1877.9
(-0.6)
P 		2950.8
(3)
P 		1158.3
(-3)
P 		1422.9
(-2.1)
P 		1813.9
(-0.8)
P 		1968.8
(-0.3)
P 		1793
B 2981.1
(3)
P 		2461.2
(1.2)
P 		1287.2
(-3)
P 		1565.3
(-2)
P 		1993.3
(-0.5)
P 		2279.5
(0.5)
P 		1694
C 3501.1
(3)
P 		2242.9
(0)
P 		1802.8
(-1)
P 		984.4
(-3)
P 		1940.2
(-0.7)
P 		1866.3
(-0.9)
P 		2517
avr 2786.7
(3) 		2551.6
(2) 		1416.1
(-2.6) 		1324.2
(-3) 		1915.8
(-0.6) 		2038.2
(-0.1) 		1463
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188971_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7404
Sequence Type Exemplar sequence
Representative Public ID K11D9.2B NCBI
Target Description K11D9.2B /REP_DB=WormBase Gene ID /WP=CE18885 /TR=Q9XU13 /GB=CAB07263.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=E1-E2 ATPases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066984(11), NM_066985(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066984 NCBI Caenorhabditis elegans SERCA (Sarco-Endoplasmic Reticulum Calcium ATPase) family member (sca-1) (sca-1) mRNA, complete cds. 11/11 A 
NM_066985 NCBI Caenorhabditis elegans SERCA (Sarco-Endoplasmic Reticulum Calcium ATPase) family member (sca-1) (sca-1) mRNA, complete cds. 11/11 None
SNAP00000035704 ENSEMBL cdna:SNAP chromosome:CEL140:III:10812828:10817080:-1 11/11 None
GENEFINDER00000035705 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10812828:10818542:-1 11/11 None
K11D9.2b ENSEMBL cdna:known chromosome:CEL140:III:10811643:10816687:-1 gene:K11D9.2 11/11 None
K11D9.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:10811808:10816721:-1 gene:K11D9.2 11/11 None
K11D9.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:10811808:10816722:-1 gene:K11D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10812195-10816683(-) 100.0 100.0
Public Domain and Genome References
Ensembl K11D9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07263 Hypothetical protein K11D9.2b [Caenorhabditis elegans] ref|NP_499385.3| SERCA (Sarco-Endoplasmic Reticulum Calcium ATPase) family member (sca-1) [Caenorhabditis elegans] 0.0
blast CAB07262 Hypothetical protein K11D9.2a [Caenorhabditis elegans] ref|NP_499386.1| SERCA (Sarco-Endoplasmic Reticulum Calcium ATPase) family member (sca-1) [Caenorhabditis elegans] emb|CAA09985.1| calcium ATPase [Caenorhabditis elegans] 0.0
blast CAE71397 Hypothetical protein CBG18305 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A1A2_HUMAN (P50993) Sodium/potassium-transporting ATPase alpha-2 chain precursor (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 2.3E-81
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 1.0E-126
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.9E-15
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 9.2E-31
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 2.3E-81
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 1.0E-126
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.9E-15
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 9.2E-31
Pfam IPR006068 EMBL-EBI Cation transporting ATPase, C-terminal 2.3E-81
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 1.0E-126
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.9E-15
Pfam IPR004014 EMBL-EBI Cation transporting ATPase, N-terminal 2.0E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499385.3 7 59-77,87-109,262-281,301-323,762-784,838-860,932-954
NP_499386.1 9 59-77,87-109,262-281,301-323,762-784,838-860,933-955,965-987,1007-1029
K11D9.2b 7 59-77,87-109,262-281,301-323,762-784,838-860,932-954
K11D9.2a.1 9 59-77,87-109,262-281,301-323,762-784,838-860,933-955,965-987,1007-1029
K11D9.2a.2 9 59-77,87-109,262-281,301-323,762-784,838-860,933-955,965-987,1007-1029
SNAP00000035704 9 108-126,136-158,311-330,350-372,811-833,887-909,982-1004,1014-1036,1056-1078
GENEFINDER00000035705 9 267-285,295-317,470-489,509-531,970-992,1046-1068,1141-1163,1173-1195,1215-1237
Sequence
Target Sequence 
>C. ELEGANS:188971_S_AT
actgctctcggattcaatccaccagatcttgacattatggacagacatccacgttcagcc
aacgatggactcatctctggatggctcttcttcagatatcttgctgtcggaacctacgtc
ggagttgccaccgtcggagcctcaatgtggtggttcttgttgtacgaggagggaccacag
atcacctactaccagctcactcactggatgagatgtgaaatcgagccagacaactttgcc
gatcttgactgcgccgtattcgaggacaatcacccgaacgccatggctctgtccgtgctt
gtcaccattgagatgctcaacgccatcaactcactttccgagaatcaatcgcttttagtg
atgccaccatggaagaacatctggctgatggccgccatttccctttcgatgtctcttcac
tttgtcattctctacgttgacatcatggccaccatcttccagatcacccctctcaactgg
gtcgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCTCTCGGATTCAATCCACCAG 89 99 2428 Antisense
TGGACTCATCTCTGGATGGCTCTTC 578 547 2493 Antisense
GATGGCTCTTCTTCAGATATCTTGC 307 407 2507 Antisense
GATATCTTGCTGTCGGAACCTACGT 490 423 2522 Antisense
GTCGGAGCCTCAATGTGGTGGTTCT 98 473 2560 Antisense
GCCAGACAACTTTGCCGATCTTGAC 639 277 2652 Antisense
TCTTGACTGCGCCGTATTCGAGGAC 314 619 2670 Antisense
TGTCCGTGCTTGTCACCATTGAGAT 347 557 2717 Antisense
AACATCTGGCTGATGGCCGCCATTT 241 137 2803 Antisense
TCTCTACGTTGACATCATGGCCACC 557 609 2856 Antisense
TCACCCCTCTCAACTGGGTCGAATG 242 623 2891 Antisense
Sequence Source Affymetrix Proprietary Database