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[188969_at] amine oxidase

Description C15A11.4 /REP_DB=WormBase Gene ID /WP=CE08172 /TR=Q93213 /GB=CAB01963.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=amine oxidase
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_high_8_8 > 37      6grp_highest_nonorm > 81      6grp_total > 92      4grp_total > 34      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 63.5
(-3)
A 		104.6
(3)
P 		81.6
(-0.4)
P 		102.9
(2.8)
P 		41
B 83.3
(-3)
P 		145.7
(3)
P 		98
(-1.6)
P 		119
(0.4)
P 		62
C 36.2
(-3)
P 		158.7
(3)
P 		104.7
(0.4)
P 		128.3
(1.5)
P 		123
avr 61
(-3) 		136.3
(3) 		94.8
(-0.3) 		116.7
(1.4) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 117.3
(-3)
P 		170.6
(-2.2)
P 		172.1
(-2.2)
P 		455.7
(2)
P 		522.9
(3)
P 		196.2
(-1.8)
P 		406
B 105.7
(-3)
P 		210.4
(-1.7)
P 		150.3
(-2.4)
P 		505.9
(2.1)
P 		573.6
(3)
P 		162.8
(-2.3)
P 		468
C 126.7
(-3)
P 		235.9
(-1.2)
P 		157.4
(-2.5)
P 		498.5
(3)
P 		480.5
(2.7)
P 		184.1
(-2.1)
P 		372
avr 116.6
(-3) 		205.6
(-1.7) 		159.9
(-2.4) 		486.7
(2.4) 		525.7
(3) 		181
(-2.1) 		409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 23.1
(3)
A 		22.7
(2.7)
P 		21.3
(1.7)
P 		15.1
(-3)
P 		8
B 26.6
(-1.2)
P 		36
(3)
P 		22.7
(-3)
P 		25.3
(-1.8)
P 		13
C 12
(-3)
P 		45.6
(3)
P 		36.5
(1.4)
P 		21.6
(-1.3)
P 		34
avr 20.6
(-3) 		34.8
(3) 		26.8
(-0.4) 		20.7
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 21.6
(-3)
P 		60.7
(-1.3)
P 		37.5
(-2.3)
P 		115.6
(1.1)
P 		157.8
(3)
P 		47.8
(-1.8)
P 		136
B 36.8
(-3)
P 		70
(-2)
P 		36.5
(-3)
P 		134
(-0)
P 		233.1
(3)
P 		60.7
(-2.3)
P 		197
C 47
(-2.6)
P 		72
(-1.3)
P 		40.1
(-3)
P 		100.2
(0.1)
P 		155.5
(3)
P 		61.6
(-1.9)
P 		115
avr 35.1
(-3) 		67.6
(-1.7) 		38
(-2.9) 		116.6
(0.3) 		182.1
(3) 		56.7
(-2.1) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1111
Sequence Type Exemplar sequence
Representative Public ID C15A11.4 NCBI
Target Description C15A11.4 /REP_DB=WormBase Gene ID /WP=CE08172 /TR=Q93213 /GB=CAB01963.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=amine oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059688(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059688 NCBI Caenorhabditis elegans C15A11.4 (C15A11.4) mRNA, complete cds. 11/11 None
SNAP00000007968 ENSEMBL cdna:SNAP chromosome:CEL140:I:7407037:7408093:-1 11/11 None
GENEFINDER00000007976 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7407037:7408096:-1 11/11 None
C15A11.4 ENSEMBL cdna:known chromosome:CEL140:I:7407037:7408926:-1 gene:C15A11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7406967-7408857(-) 100.0 100.0
Public Domain and Genome References
Gene Title amine oxidase
Ensembl C15A11.4
Entrez Gene 182626 Entrez gene
SwissProt Q93213 EMBL-EBI
WormBase CE08172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01963 Hypothetical protein C15A11.4 [Caenorhabditis elegans] ref|NP_492089.1| C15A11.4 [Caenorhabditis elegans] 0.0
blast CAB01964 Hypothetical protein C15A11.7 [Caenorhabditis elegans] ref|NP_492092.1| C15A11.7 [Caenorhabditis elegans] 1.0E-172
blast CAE66609 Hypothetical protein CBG11935 [Caenorhabditis briggsae] 1.0E-170
blast CAB01963 Hypothetical protein C15A11.4 [Caenorhabditis elegans] ref|NP_492089.1| C15A11.4 [Caenorhabditis elegans] 1.0E-133
blast CAB01963 Hypothetical protein C15A11.4 [Caenorhabditis elegans] ref|NP_492089.1| C15A11.4 [Caenorhabditis elegans] 1.0E-132
blast CAB01964 Hypothetical protein C15A11.7 [Caenorhabditis elegans] ref|NP_492092.1| C15A11.7 [Caenorhabditis elegans] 1.0E-109
blast CAB01964 Hypothetical protein C15A11.7 [Caenorhabditis elegans] ref|NP_492092.1| C15A11.7 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492089.1 9 66-88,101-123,138-155,162-184,194-212,225-247,300-322,329-347,351-373
C15A11.4 9 66-88,101-123,138-155,162-184,194-212,225-247,300-322,329-347,351-373
SNAP00000007968 6 12-34,49-66,79-101,154-176,183-201,205-227
GENEFINDER00000007976 6 13-35,50-67,80-102,155-177,184-202,206-228
Sequence
Target Sequence 
>C. ELEGANS:188969_AT
ttgctctcggactactgaatgctcaaaaaaagaggccgacatttgtcaaaattccagaat
tttgtttctggaaaggtcttcttctgttcttaacaggtattgttggaggagtctttgacg
catttgctggaagtggaattgatatttgtatgttttcaattgtgaccctattatttcgag
tcagcgaaaaaacagctacacccacaactatgattttgaaaggaatcgtctctgtgtttg
ggttctggtatcgtggggttatgatgggagacatatcggaaactgcatggaattattttg
ctgtaacaataccagtagtggcaacaatggcaccaattggttcatttcttggatctcatc
tccatcgacaagtcattgcggggctcatttatgtgttagaattggcatctttaattggtt
ttctgctcacaaatccctcgtggggactgatttccgcagcagttacaataattctatgcg
gtttcggtttttttgcactcattgccaagtctggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCTCGGACTACTGAATGCTCA 276 701 626 Antisense
GAAAGGTCTTCTTCTGTTCTTAACA 413 361 696 Antisense
GAGGAGTCTTTGACGCATTTGCTGG 83 405 731 Antisense
AACAGCTACACCCACAACTATGATT 324 137 816 Antisense
AGGAATCGTCTCTGTGTTTGGGTTC 251 53 846 Antisense
TGGTTCATTTCTTGGATCTCATCTC 580 551 963 Antisense
TCTCATCTCCATCGACAAGTCATTG 270 611 979 Antisense
CTGCTCACAAATCCCTCGTGGGGAC 507 237 1048 Antisense
GGGACTGATTTCCGCAGCAGTTACA 413 495 1068 Antisense
TGCGGTTTCGGTTTTTTTGCACTCA 297 555 1102 Antisense
TTTGCACTCATTGCCAAGTCTGGTG 391 667 1117 Antisense
Sequence Source Affymetrix Proprietary Database