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[188968_at] F-box domain.

Description F44G3.8 /REP_DB=WormBase Gene ID /WP=CE16039 /TR=O62239 /GB=CAB05520.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=F-box domain.
Cluster 6grp_high1_10_10 > 42      6grp_total > 30      4grp_total > 47      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 90.8
(3)
P 		37.7
(-1.2)
A 		14.7
(-3)
A 		18.3
(-2.7)
A 		76
B 108.5
(3)
P 		14.1
(-2.7)
A 		8.7
(-3)
A 		18.2
(-2.4)
A 		100
C 98.4
(3)
P 		20.6
(-3)
A 		31.2
(-2.2)
A 		54.6
(-0.4)
A 		78
avr 99.2
(3) 		24.1
(-2.6) 		18.2
(-3) 		30.4
(-2.1) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 208.6
(0.3)
P 		163.9
(-1)
P 		303
(3)
P 		216.1
(0.5)
P 		188.3
(-0.3)
P 		94.4
(-3)
A 		209
B 173.8
(-1.4)
P 		310.6
(3)
P 		224.1
(0.2)
P 		190.8
(-0.8)
P 		155.3
(-1.9)
P 		122.1
(-3)
P 		189
C 143.5
(-0.7)
P 		225.3
(1.8)
P 		220.9
(1.7)
P 		265.3
(3)
P 		126.1
(-1.2)
P 		65.4
(-3)
P 		200
avr 175.3
(0.1) 		233.3
(2.4) 		249.3
(3) 		224.1
(2) 		156.6
(-0.6) 		94
(-3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 33
(3)
P 		8.2
(-1.9)
A 		3.8
(-2.8)
A 		2.7
(-3)
A 		30
B 34.6
(3)
P 		3.5
(-2.7)
A 		2
(-3)
A 		3.9
(-2.7)
A 		33
C 32.6
(3)
P 		5.9
(-3)
A 		10.9
(-1.9)
A 		9.2
(-2.3)
A 		27
avr 33.4
(3) 		5.9
(-2.9) 		5.6
(-2.9) 		5.3
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 38.5
(-0.8)
P 		58.3
(1.9)
P 		66
(3)
P 		54.8
(1.4)
P 		56.8
(1.7)
P 		23
(-3)
A 		43
B 60.5
(-1.4)
P 		103.4
(3)
P 		54.4
(-2.1)
P 		50.5
(-2.5)
P 		63.1
(-1.2)
P 		45.5
(-3)
P 		58
C 53.2
(1)
P 		68.7
(3)
P 		56.2
(1.4)
P 		53.4
(1)
P 		40.8
(-0.6)
P 		21.9
(-3)
P 		47
avr 50.7
(-0.4) 		76.8
(3) 		58.9
(0.7) 		52.9
(-0.1) 		53.6
(0) 		30.1
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13129
Sequence Type Exemplar sequence
Representative Public ID F44G3.8 NCBI
Target Description F44G3.8 /REP_DB=WormBase Gene ID /WP=CE16039 /TR=O62239 /GB=CAB05520.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=F-box domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074660(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074660 NCBI Caenorhabditis elegans F44G3.8 (F44G3.8) mRNA, complete cds. 11/11 None
SNAP00000003419 ENSEMBL cdna:SNAP chromosome:CEL140:V:16128446:16130077:-1 11/11 None
GENEFINDER00000003432 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16125339:16130077:-1 11/11 None
F44G3.8 ENSEMBL cdna:known chromosome:CEL140:V:16128394:16135866:-1 gene:F44G3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16128445-16135866(-) 99.98 100.0
Public Domain and Genome References
Gene Title F-box domain.
Ensembl F44G3.8
Entrez Gene 185756 Entrez gene
SwissProt O62239 EMBL-EBI
WormBase CE16039 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 0.0
blast CAB05521 Hypothetical protein F44G3.9 [Caenorhabditis elegans] ref|NP_507060.2| Nuclear Hormone Receptor family member (nhr-111) [Caenorhabditis elegans] 1.0E-159
blast CAB60400 Hypothetical protein Y60A3A.15 [Caenorhabditis elegans] ref|NP_507858.1| Y60A3A.15 [Caenorhabditis elegans] 2.0E-76
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 2.0E-41
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 3.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-50
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-15
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-51
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.8E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.9E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-51
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-51
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-11
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.4E-37
Sequence
Target Sequence 
>C. ELEGANS:188968_AT
gaatccggcacttcgcttggaaaaatttccgattcagctttctgttgatgttgagcaaac
tgggacttatttttcaactcttcttgatgttttgaaatcctccatgtcttgcctacacgt
taaaaagtttcatgggacagatttctccgaggagcagcttctattagtgatccctttcct
aaaagctggatatcttgaaaaaattgagctgctttccaatgagcccacagatctcgagaa
aatcgctaaacttgagcaatggaaaagagcacaagtttttgattcgttctggaagagtta
taaggtttctgtcgaggatatgctccatttcagagagttctatgtaattgtaccttgctt
ttcaaaagaggatgcagtaaaactgagagatttgctcacaaaatcagtggacttcgagaa
cgggtgcttcaagttccccgaaaccaacattatcgaaatagtgagagttttcattctgga
ctacgaaggagaagaacgggccaaaattgattataacgagaatggcacagattttatctt
ggactttagcacagaacactttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCGGCACTTCGCTTGGAAAAA 388 329 3720 Antisense
AAAATTTCCGATTCAGCTTTCTGTT 104 135 3741 Antisense
GGGACTTATTTTTCAACTCTTCTTG 370 493 3781 Antisense
GATGTTTTGAAATCCTCCATGTCTT 537 409 3805 Antisense
TCCATGTCTTGCCTACACGTTAAAA 163 591 3820 Antisense
ATGGGACAGATTTCTCCGAGGAGCA 112 49 3851 Antisense
GCAGCTTCTATTAGTGATCCCTTTC 662 313 3873 Antisense
TTGAGCTGCTTTCCAATGAGCCCAC 526 705 3923 Antisense
GTGGACTTCGAGAACGGGTGCTTCA 281 489 4126 Antisense
TCAAGTTCCCCGAAACCAACATTAT 651 627 4148 Antisense
GGACTTTAGCACAGAACACTTTCGA 151 523 4260 Antisense
Sequence Source Affymetrix Proprietary Database