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[188967_at]

Description H14A12.1 /REP_DB=WormBase Gene ID /WP=CE11578 /TR=O17216 /GB=AAB70983.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 92      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 37.8
(-1.1)
A 		29
(-3)
A 		56.2
(3)
A 		43.8
(0.3)
A 		27
B 24.3
(-3)
A 		54
(0.4)
A 		55.9
(0.6)
A 		76.6
(3)
A 		52
C 64.5
(0.9)
A 		95.1
(3)
A 		9.1
(-3)
A 		85
(2.3)
A 		86
avr 42.2
(-2.6) 		59.4
(1.1) 		40.4
(-3) 		68.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 32.7
(-0.5)
A 		40.6
(0.3)
A 		37.2
(-0.1)
A 		63.8
(2.7)
A 		67
(3)
A 		8.6
(-3)
A 		58
B 45.5
(3)
A 		45.6
(3)
A 		15
(-2.3)
A 		12.5
(-2.8)
A 		41
(2.2)
A 		11.2
(-3)
A 		34
C 23.6
(-0.9)
A 		40
(2.2)
A 		44
(3)
A 		34.8
(1.2)
A 		20.5
(-1.5)
A 		12.7
(-3)
A 		31
avr 33.9
(1.3) 		42.1
(2.9) 		32.1
(1) 		37
(1.9) 		42.8
(3) 		10.8
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 13.8
(2.4)
A 		6.3
(-3)
A 		14.7
(3)
A 		6.4
(-2.9)
A 		8
B 7.8
(-3)
A 		13.3
(0.9)
A 		13
(0.7)
A 		16.3
(3)
A 		9
C 21.3
(1.5)
A 		27.4
(3)
A 		3.2
(-3)
A 		14.3
(-0.2)
A 		24
avr 14.3
(1.4) 		15.7
(3) 		10.3
(-3) 		12.3
(-0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6
(-1.7)
A 		14.4
(1.1)
A 		8.1
(-1)
A 		16.2
(1.7)
A 		20.2
(3)
A 		2.1
(-3)
A 		18
B 15.8
(2.6)
A 		15.2
(2.4)
A 		3.7
(-2.8)
A 		3.3
(-3)
A 		16.6
(3)
A 		4.2
(-2.6)
A 		13
C 8.7
(0.3)
A 		12.2
(3)
A 		11.2
(2.2)
A 		7
(-0.9)
A 		6.6
(-1.3)
A 		4.3
(-3)
A 		8
avr 10.2
(0.7) 		13.9
(2.7) 		7.7
(-0.7) 		8.8
(-0.1) 		14.5
(3) 		3.5
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7076
Sequence Type Exemplar sequence
Representative Public ID H14A12.1 NCBI
Target Description H14A12.1 /REP_DB=WormBase Gene ID /WP=CE11578 /TR=O17216 /GB=AAB70983.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) H14A12.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H14A12.1 H14A12.1 /REP_DB=WormBase Gene ID /WP=CE11578 /TR=O17216 /GB=AAB70983.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=transposase None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023371 1/11 Cross Hyb Matching Probes None
SNAP00000019002 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019005 2/11 Cross Hyb Matching Probes None
F07E5.10 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:188967_AT
ggcgcacaccactatgaaggattcaaaaactcttctaatgaaagtttataacgaacctgc
tccctcgtataaaactatacataagtgtattgcatcggatccatttcaaattacctgtga
gcttgcaagcacgtttggggtctctcataactctataccagataacatgaaattgctcgg
catgaggaaaattcttcgtcgattcctacctcattatttgacccgttccaacctttttca
ccaaaacgagaagtgggtgttgtacgctaatcaccacagacaagctcagtggattggaga
agggcaaaccgcacaggatgttccgaaactcggccttcacccaaaaacgaatgattattg
gcttctctccgatctgacttgtgccctccgaggtaaaaccttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGCACACCACTATGAAGGATTCA 70 543 21 Antisense
ACCTGCTCCCTCGTATAAAACTATA 517 85 75 Antisense
GTGTATTGCATCGGATCCATTTCAA 123 487 105 Antisense
AGCTTGCAAGCACGTTTGGGGTCTC 214 79 140 Antisense
GGGTCTCTCATAACTCTATACCAGA 528 497 158 Antisense
GAAAATTCTTCGTCGATTCCTACCT 486 347 207 Antisense
CGATTCCTACCTCATTATTTGACCC 705 247 220 Antisense
GTACGCTAATCACCACAGACAAGCT 637 457 282 Antisense
CTCGGCCTTCACCCAAAAACGAATG 106 233 349 Antisense
GAATGATTATTGGCTTCTCTCCGAT 509 331 369 Antisense
TGCCCTCCGAGGTAAAACCTTCACA 425 569 402 Antisense
Sequence Source Affymetrix Proprietary Database