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[188964_at] ankyrin motif

Description D1081.5 /REP_DB=WormBase Gene ID /WP=CE05537 /TR=Q18958 /GB=CAB00026.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ankyrin motif
Cluster 6grp_total > 88      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 5.4
(-3)
A 		21.5
(-2)
A 		11.4
(-2.6)
A 		100.9
(3)
A 		96
B 53.5
(3)
A 		11.3
(-2.2)
A 		4.6
(-3)
A 		26.5
(-0.3)
A 		49
C 6.1
(-3)
A 		13.2
(-2.6)
A 		28.5
(-1.6)
A 		104.8
(3)
A 		99
avr 21.7
(-2.3) 		15.3
(-3) 		14.8
(-3) 		77.4
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 4.2
(-3)
A 		6.9
(-2.9)
A 		15.6
(-2.8)
A 		14.8
(-2.8)
A 		146.4
(0.1)
P 		279.3
(3)
P 		275
B 3.6
(-3)
A 		7.6
(-2.9)
A 		10.2
(-2.8)
A 		4.2
(-3)
A 		171.2
(1.3)
P 		239.7
(3)
P 		236
C 7
(-3)
A 		4.8
(-3)
A 		9.9
(-2.9)
A 		17.4
(-2.7)
A 		163
(0.3)
P 		289.8
(3)
P 		285
avr 4.9
(-3) 		6.4
(-3) 		11.9
(-2.8) 		12.1
(-2.8) 		160.2
(0.5) 		269.6
(3) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2
(-3)
A 		4.7
(-1.7)
A 		3
(-2.5)
A 		14.8
(3)
A 		13
B 17
(3)
A 		2.8
(-2.4)
A 		1.1
(-3)
A 		5.7
(-1.3)
A 		16
C 2
(-3)
A 		3.8
(-2.3)
A 		9.9
(0)
A 		17.7
(3)
A 		16
avr 7
(-0.8) 		3.8
(-3) 		4.7
(-2.4) 		12.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.4
(-2.9)
A 		3.4
(-2.8)
A 		3.8
(-2.7)
A 		44.2
(0.9)
P 		68
(3)
P 		67
B 1.3
(-3)
A 		2.5
(-2.9)
A 		2.5
(-2.9)
A 		1.1
(-3)
A 		69.6
(1.7)
P 		89.4
(3)
P 		88
C 2.6
(-2.9)
A 		1.5
(-3)
A 		2.5
(-2.9)
A 		3.5
(-2.9)
A 		52.8
(0.2)
P 		97
(3)
P 		96
avr 1.6
(-3) 		2.1
(-3) 		2.8
(-2.9) 		2.8
(-2.9) 		55.5
(0.9) 		84.8
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.567
Sequence Type Exemplar sequence
Representative Public ID D1081.5 NCBI
Target Description D1081.5 /REP_DB=WormBase Gene ID /WP=CE05537 /TR=Q18958 /GB=CAB00026.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ankyrin motif
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059898 NCBI Caenorhabditis elegans D1081.5 (D1081.5) mRNA, complete cds. 11/11 None
SNAP00000043198 ENSEMBL cdna:SNAP chromosome:CEL140:I:8489339:8490566:1 11/11 None
GENEFINDER00000043211 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8489339:8490684:1 9/11 None
D1081.5 ENSEMBL cdna:known chromosome:CEL140:I:8489339:8490566:1 gene:D1081.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8489269-8490497(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin motif
Ensembl D1081.5
Entrez Gene 183929 Entrez gene
SwissProt Q18958 EMBL-EBI
WormBase CE05537 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00026 Hypothetical protein D1081.5 [Caenorhabditis elegans] ref|NP_492299.1| D1081.5 [Caenorhabditis elegans] 1.0E-153
blast CAB00026 Hypothetical protein D1081.5 [Caenorhabditis elegans] ref|NP_492299.1| D1081.5 [Caenorhabditis elegans] 1.0E-121
blast CAE59150 Hypothetical protein CBG02455 [Caenorhabditis briggsae] 2.0E-73
blast AAB38095 Hypothetical protein F54H5.5 [Caenorhabditis elegans] ref|NP_495346.1| F54H5.5 [Caenorhabditis elegans] 1.0E-71
Sequence
Target Sequence 
>C. ELEGANS:188964_AT
aatgctcattcatcgtaatcgtctcgctcgcacctcaaaatctcgacttgcactataccg
tacttcacctgaaattgcacggttctcgagaggatctccggacgatattgaaaatgagaa
cttgtctatgtcgaaaattaggtcaattaccgaggagacatcaattttagatccgacgct
ttgtatggatgagacgacgcatcaaagaggatttctggcagatgtgagcgatatgaatgg
aactgtccgttctcgaatgcccagtttcaattttaatcacatatctcctgtacctgctga
gaaaacacgtcgacactctgttctgaatgtcacaaccgactttgacgtggatctttcttc
attatgtgagccaagtcaaattgaggaaaattctggacagattttgtttcaaaatgtact
ggagtctgcgttgcgtactccaaacgcaaacaataatacaattcttctaaccgattccga
agtgacacctgtgaatatttctaacttgtggaatgtgaagcttcgtccagggagcaatcg
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTCATTCATCGTAATCGTCTC 612 165 237 Antisense
AAATCTCGACTTGCACTATACCGTA 314 117 274 Antisense
CACTATACCGTACTTCACCTGAAAT 150 197 287 Antisense
GCACGGTTCTCGAGAGGATCTCCGG 555 315 313 Antisense
ATGGAACTGTCCGTTCTCGAATGCC 313 53 473 Antisense
TTAATCACATATCTCCTGTACCTGC 385 685 509 Antisense
GAAAACACGTCGACACTCTGTTCTG 233 353 537 Antisense
GACGTGGATCTTTCTTCATTATGTG 119 377 580 Antisense
GTACTGGAGTCTGCGTTGCGTACTC 427 459 652 Antisense
ATACAATTCTTCTAACCGATTCCGA 297 25 692 Antisense
GAAGCTTCGTCCAGGGAGCAATCGA 624 341 753 Antisense
Sequence Source Affymetrix Proprietary Database