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[188962_at] transferase

Description H23N18.3 /REP_DB=WormBase Gene ID /WP=CE20985 /TR=Q9TXZ4 /GB=AAD14732.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 12      4grp_high_8_8 > 38      6grp_highest_nonorm > 92      6grp_total > 74      4grp_total > 33      6grp_highest_sub > 04_05_06      6grp_cgc > 77      6grp_high1_sub > In      6grp_cgc_sub > 04_05_06      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2490
1 2 3 4 range
A 426.4
(-3)
P 		2353.9
(2)
P 		2729.1
(3)
P 		1850
(0.7)
P 		2303
B 239.5
(-3)
P 		2365.6
(2.7)
P 		2477.4
(3)
P 		2454.4
(2.9)
P 		2238
C 539.2
(-3)
P 		2259.5
(2.4)
P 		2448.3
(3)
P 		1901.4
(1.3)
P 		1909
avr 401.7
(-3) 		2326.3
(2.4) 		2551.6
(3) 		2068.6
(1.7) 		2150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 86.7
(-3)
P 		237
(-1.1)
P 		348.1
(0.3)
P 		495.2
(2.1)
P 		566.8
(3)
P 		434
(1.3)
P 		480
B 57.7
(-3)
P 		194.9
(-1.4)
P 		400
(1)
P 		481.7
(2)
P 		376.6
(0.7)
P 		568.7
(3)
P 		511
C 72.3
(-3)
P 		296.3
(0)
P 		341.5
(0.6)
P 		519.9
(3)
P 		388.3
(1.2)
P 		480.8
(2.5)
P 		448
avr 72.2
(-3) 		242.7
(-0.6) 		363.2
(1.1) 		498.9
(3) 		443.9
(2.2) 		494.5
(2.9) 		427
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 777
1 2 3 4 range
A 155.3
(-3)
P 		511
(0.8)
P 		713.4
(3)
P 		270.8
(-1.8)
P 		558
B 76.4
(-3)
P 		584.3
(3)
P 		574.1
(2.9)
P 		523
(2.3)
P 		508
C 178.5
(-3)
P 		649.6
(1.2)
P 		853.3
(3)
P 		320.6
(-1.7)
P 		675
avr 136.7
(-3) 		581.6
(1.6) 		713.6
(3) 		371.5
(-0.6) 		577

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 16
(-3)
P 		84.3
(-0.4)
P 		75.8
(-0.7)
P 		125.6
(1.2)
P 		171
(3)
P 		105.7
(0.5)
P 		155
B 20.1
(-3)
P 		64.9
(-1.6)
P 		97.1
(-0.6)
P 		127.6
(0.4)
P 		153
(1.2)
P 		212
(3)
P 		192
C 26.8
(-3)
P 		90.4
(-0.2)
P 		86.9
(-0.3)
P 		104.6
(0.5)
P 		125.6
(1.4)
P 		160.9
(3)
P 		134
avr 21
(-3) 		79.9
(-0.4) 		86.6
(-0.2) 		119.3
(1.3) 		149.9
(2.6) 		159.5
(3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15740
Sequence Type Exemplar sequence
Representative Public ID H23N18.3 NCBI
Target Description H23N18.3 /REP_DB=WormBase Gene ID /WP=CE20985 /TR=Q9TXZ4 /GB=AAD14732.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071914(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071914 NCBI Caenorhabditis elegans H23N18.3 (transferase) mRNA, complete cds. 11/11 None
SNAP00000039200 ENSEMBL cdna:SNAP chromosome:CEL140:V:4903814:4905664:1 11/11 None
H23N18.3 ENSEMBL cdna:known chromosome:CEL140:V:4903814:4905664:1 gene:H23N18.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039208 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4903813-4905664(+) 100.0 100.0
Public Domain and Genome References
Gene Title transferase
Gene Symbol ugt-8
Ensembl H23N18.3
Entrez Gene 186768 Entrez gene
SwissProt Q9TXZ4 EMBL-EBI
WormBase CE20985 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639299_AT UDP-glycosyltransferase 37c1 dm
DROSGENOME1:144101_AT UDP-glycosyltransferase 37c1 dm
HU35KSUBC:RC_Z39483_AT UDP glycosyltransferase 3 family, polypeptide A2 hs
HG-U95B:46741_AT UDP glycosyltransferase 3 family, polypeptide A2 hs
HG-U95B:46742_G_AT UDP glycosyltransferase 3 family, polypeptide A2 hs
HG-U95C:60915_AT UDP glycosyltransferase 3 family, polypeptide A2 hs
MG-U74BV2:111054_AT UDP glycosyltransferases 3 family, polypeptide A1 mm
MOE430A:1424493_S_AT UDP glycosyltransferases 3 family, polypeptide A1 mm
MOUSE430A_2:1424493_S_AT UDP glycosyltransferases 3 family, polypeptide A1 mm
MOUSE430_2:1424493_S_AT UDP glycosyltransferases 3 family, polypeptide A1 mm
MOE430A:1451373_AT UDP glycosyltransferases 3 family, polypeptide A1 mm
MOUSE430A_2:1451373_AT UDP glycosyltransferases 3 family, polypeptide A1 mm
MOUSE430_2:1451373_AT UDP glycosyltransferases 3 family, polypeptide A1 mm
MG-U74BV2:112475_R_AT UDP glycosyltransferases 3 family, polypeptide A2 mm
MG-U74BV2:112474_F_AT UDP glycosyltransferases 3 family, polypeptide A2 mm
MOE430A:1423968_AT UDP glycosyltransferases 3 family, polypeptide A2 mm
MOUSE430A_2:1423968_AT UDP glycosyltransferases 3 family, polypeptide A2 mm
MOUSE430_2:1423968_AT UDP glycosyltransferases 3 family, polypeptide A2 mm
MU19KSUBA:TC24543_AT UDP glycosyltransferases 3 family, polypeptide A2, transcript variant 1, mRNA (cDNA clone MGC:37957 IMAGE:5134131) mm
MU19KSUBB:TC32194_AT UDP glycosyltransferases 3 family, polypeptide A1, mRNA (cDNA clone MGC:37869 IMAGE:5100753) mm
MU19KSUBB:TC32194_G_AT UDP glycosyltransferases 3 family, polypeptide A1, mRNA (cDNA clone MGC:37869 IMAGE:5100753) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14732 Udp-glucuronosyltransferase protein 8 [Caenorhabditis elegans] ref|NP_504315.1| H23N18.3 [Caenorhabditis elegans] 0.0
blast NP_504313 T19H12.11 [Caenorhabditis elegans] 0.0
blast AAC69026 Udp-glucuronosyltransferase protein 9 [Caenorhabditis elegans] ref|NP_504312.1| T19H12.1 [Caenorhabditis elegans] 0.0
blast CAE64224 Hypothetical protein CBG08857 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.4E-20
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.4E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504315.1 2 7-29,499-521
H23N18.3 2 7-29,499-521
SNAP00000039200 2 7-29,476-498
Sequence
Target Sequence 
>C. ELEGANS:188962_AT
gaagcttccgaagaatgttcacttaaagaaatgggtgccgcaacactcccttcttgctga
taaccgcgtgaagctatttgtgacccatggaggactgggaagtacaatggaagtagctta
caccggcaagccggctctaatggttccaattttcggagatcaaccagaaaatgcaaatat
gctcgcaagacatggaggagctatttcttatgataaattcgagctggctgatggagaaaa
attggcgataactattcgggatatggtgagaaatccaaagtacaataagaatgctcaaga
gctgctcaaggtgctctctcaccagccaattgatccaaagttaaatcttatgaagcatct
ggagtttgcgatggaatttccaaatctccgatctcaagttccagcaatcaatcaaatggg
tcttattgcacattattacctagatgtgattttcttcctttcattaattttcattctcac
cgtttatcttacattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTTCCGAAGAATGTTCACTTA 187 341 1062 Antisense
AAGAAATGGGTGCCGCAACACTCCC 461 153 1087 Antisense
CCTTCTTGCTGATAACCGCGTGAAG 283 269 1110 Antisense
ACCGCGTGAAGCTATTTGTGACCCA 636 89 1124 Antisense
AAGAGCTGCTCAAGGTGCTCTCTCA 79 155 1358 Antisense
GATGGAATTTCCAAATCTCCGATCT 78 407 1431 Antisense
CTCCGATCTCAAGTTCCAGCAATCA 693 233 1447 Antisense
GGGTCTTATTGCACATTATTACCTA 499 497 1479 Antisense
TTTTCTTCCTTTCATTAATTTTCAT 407 675 1511 Antisense
AATTTTCATTCTCACCGTTTATCTT 489 175 1527 Antisense
ATTCTCACCGTTTATCTTACATTTA 147 11 1534 Antisense
Sequence Source Affymetrix Proprietary Database