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[188957_at] dehydrogenase

Description T04B2.6 /REP_DB=WormBase Gene ID /WP=CE03613 /TR=Q22149 /GB=CAA92612.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 30      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 43      4grp_total > 38      6grp_cgc > 91      6grp_high1_sub > 03      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 178.9
(2.7)
P 		88.8
(-3)
P 		133
(-0.2)
P 		183.2
(3)
P 		94
B 200.8
(2.9)
P 		202.7
(3)
P 		117.6
(-3)
P 		131.2
(-2)
P 		85
C 217.7
(3)
P 		154.8
(-0.6)
P 		113.8
(-3)
P 		168.5
(0.2)
P 		104
avr 199.1
(3) 		148.8
(-0.9) 		121.5
(-3) 		161
(0.1) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 216.9
(3)
P 		159.2
(-1.3)
P 		178.9
(0.2)
P 		136.9
(-3)
P 		164.4
(-0.9)
P 		153.9
(-1.7)
P 		80
B 141.3
(-1.8)
P 		125.9
(-3)
P 		203.9
(3)
P 		156.1
(-0.7)
P 		143
(-1.7)
P 		153.4
(-0.9)
P 		78
C 153.8
(1.3)
P 		141.1
(0.1)
P 		162.9
(2.1)
P 		172.2
(3)
P 		108.5
(-3)
P 		151.1
(1)
P 		64
avr 170.7
(1.4) 		142.1
(-2.5) 		181.9
(3) 		155.1
(-0.7) 		138.6
(-3) 		152.8
(-1) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 65.1
(3)
P 		19.3
(-3)
P 		34.8
(-1)
P 		26.8
(-2)
P 		46
B 64
(3)
P 		50.1
(0.7)
P 		27.2
(-3)
P 		28
(-2.9)
P 		37
C 72.1
(3)
P 		44.5
(-0.8)
P 		39.7
(-1.4)
P 		28.4
(-3)
P 		44
avr 67.1
(3) 		38
(-1.4) 		33.9
(-2.1) 		27.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 40
(-1.5)
P 		56.6
(3)
P 		39
(-1.8)
P 		34.7
(-3)
P 		49.6
(1.1)
P 		37.5
(-2.2)
P 		22
B 49.1
(-0.2)
P 		41.9
(-2.8)
P 		49.5
(-0.1)
P 		41.3
(-3)
P 		58.1
(3)
P 		57.2
(2.7)
P 		17
C 57
(3)
P 		43
(-0.8)
P 		41.5
(-1.2)
P 		34.6
(-3)
P 		35.1
(-2.9)
P 		50.6
(1.3)
P 		22
avr 48.7
(3) 		47.2
(2.2) 		43.3
(0.3) 		36.9
(-3) 		47.6
(2.4) 		48.4
(2.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9038
Sequence Type Exemplar sequence
Representative Public ID T04B2.6 NCBI
Target Description T04B2.6 /REP_DB=WormBase Gene ID /WP=CE03613 /TR=Q22149 /GB=CAA92612.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069415 NCBI Caenorhabditis elegans T04B2.6 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000005411 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10039816:10040763:-1 11/11 None
GENEFINDER00000005427 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10039816:10040763:-1 10/11 None
T04B2.6 ENSEMBL cdna:known chromosome:CEL140:IV:10039626:10040763:-1 gene:T04B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10039631-10040769(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Gene Symbol dhs-31
Ensembl T04B2.6
Entrez Gene 188051 Entrez gene
SwissProt Q22149 EMBL-EBI
WormBase CE03613 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92612 Hypothetical protein T04B2.6 [Caenorhabditis elegans] ref|NP_501816.1| T04B2.6 [Caenorhabditis elegans] 1.0E-140
blast CAA92612 Hypothetical protein T04B2.6 [Caenorhabditis elegans] ref|NP_501816.1| T04B2.6 [Caenorhabditis elegans] 1.0E-130
blast CAA92612 Hypothetical protein T04B2.6 [Caenorhabditis elegans] ref|NP_501816.1| T04B2.6 [Caenorhabditis elegans] 1.0E-121
blast T24440 hypothetical protein T04B2.1 - Caenorhabditis elegans 4.0E-87
blast CAA93099 Hypothetical protein K08F4.9 [Caenorhabditis elegans] emb|CAA93091.1| Hypothetical protein K08F4.9 [Caenorhabditis elegans] ref|NP_501850.1| DeHydrogenases, Short chain family member (dhs-12) [Caenorhabditis elegans] 2.0E-85
blast T24440 hypothetical protein T04B2.1 - Caenorhabditis elegans 1.0E-82
blast CAA93099 Hypothetical protein K08F4.9 [Caenorhabditis elegans] emb|CAA93091.1| Hypothetical protein K08F4.9 [Caenorhabditis elegans] ref|NP_501850.1| DeHydrogenases, Short chain family member (dhs-12) [Caenorhabditis elegans] 3.0E-81
blast T24440 hypothetical protein T04B2.1 - Caenorhabditis elegans 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.5E-19
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.1E-16
Sequence
Target Sequence 
>C. ELEGANS:188957_AT
tgaaagtctcgtcggggaccgtggactcaatttacttatcaataatgctggttgctatga
gttatacgaaacgacggattctcccagtagaaaggcatctttgaagtgtttcgatgtaaa
tgctgttggctctttgatggcttctcagttattccttcctcttctcaaaaaagcagctgc
tcacactcacataaccggactttcggctagtcgcgctgcaattctgaacattggatccga
ttgctcttctcagtttttgaatggtacacctactgtaaacgacgtttcaattgcctacaa
aatgagcaaagtggcaatgcttagtttcgccaggtcacttgcttctgacttcagaactct
gaacattcctgttttaattgcaactattcatccaggttgggtgctcactgaaatgggagg
ttcagatgcagaaataacggtggaggagtcggcaacggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAGTCTCGTCGGGGACCGTGGA 489 545 237 Antisense
ACGAAACGACGGATTCTCCCAGTAG 233 89 302 Antisense
AATGCTGTTGGCTCTTTGATGGCTT 689 165 355 Antisense
TTGATGGCTTCTCAGTTATTCCTTC 278 701 370 Antisense
TCACACTCACATAACCGGACTTTCG 146 629 417 Antisense
CTAGTCGCGCTGCAATTCTGAACAT 458 225 443 Antisense
AACATTGGATCCGATTGCTCTTCTC 284 139 463 Antisense
TAAACGACGTTTCAATTGCCTACAA 309 639 512 Antisense
GGCAATGCTTAGTTTCGCCAGGTCA 407 529 549 Antisense
ATTCATCCAGGTTGGGTGCTCACTG 331 9 622 Antisense
AACGGTGGAGGAGTCGGCAACGGAT 100 143 672 Antisense
Sequence Source Affymetrix Proprietary Database