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[188956_at]

Description C27D6.4 /REP_DB=WormBase Gene ID /WP=CE01814 /TR=Q09636 /GB=AAC46724.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=BZIP protein
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 62      6grp_total > 10      4grp_total > 13      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1251
1 2 3 4 range
A 739.3
(1.4)
P 		454.4
(-1.4)
P 		285.3
(-3)
P 		903.9
(3)
P 		619
B 724.8
(-0.4)
P 		374
(-2.4)
P 		270.5
(-3)
P 		1309.4
(3)
P 		1039
C 848.8
(-0.1)
P 		332.4
(-2.6)
P 		250.8
(-3)
P 		1502.1
(3)
P 		1251
avr 771
(0.1) 		386.9
(-2.3) 		268.9
(-3) 		1238.5
(3) 		970

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 449.2
(-0.4)
P 		475
(0.1)
P 		632.1
(3)
P 		593.5
(2.3)
P 		521.9
(0.9)
P 		312.1
(-3)
P 		320
B 460.7
(-3)
P 		679.3
(3)
P 		570.9
(0)
P 		506.6
(-1.7)
P 		496
(-2)
P 		477.1
(-2.5)
P 		219
C 429
(-1)
P 		666.5
(3)
P 		309.4
(-3)
P 		491
(0.1)
P 		357.5
(-2.2)
P 		633.6
(2.4)
P 		357
avr 446.3
(-3) 		606.9
(3) 		504.1
(-0.8) 		530.4
(0.1) 		458.5
(-2.5) 		474.3
(-2) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 269.2
(3)
P 		98.6
(-2.3)
P 		74.6
(-3)
P 		132.3
(-1.2)
P 		195
B 231.1
(1.7)
P 		92.4
(-2.2)
P 		62.7
(-3)
P 		279
(3)
P 		216
C 281
(3)
P 		95.6
(-2.7)
P 		87.4
(-3)
P 		253.3
(2.1)
P 		194
avr 260.4
(3) 		95.5
(-2.3) 		74.9
(-3) 		221.5
(1.7) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 82.8
(-2.6)
P 		168.9
(3)
P 		137.7
(1)
P 		150.5
(1.8)
P 		157.5
(2.3)
P 		76
(-3)
P 		93
B 160.3
(-1.3)
P 		226.1
(3)
P 		138.6
(-2.7)
P 		134.2
(-3)
P 		201.5
(1.4)
P 		177.9
(-0.1)
P 		92
C 159
(0.6)
P 		203.4
(2.6)
P 		78.8
(-3)
P 		98.7
(-2.1)
P 		115.7
(-1.3)
P 		212.1
(3)
P 		133
avr 134
(-1.8) 		199.5
(3) 		118.4
(-3) 		127.8
(-2.3) 		158.2
(-0.1) 		155.3
(-0.3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5936
Sequence Type Exemplar sequence
Representative Public ID C27D6.4 NCBI
Target Description C27D6.4 /REP_DB=WormBase Gene ID /WP=CE01814 /TR=Q09636 /GB=AAC46724.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=BZIP protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170989, NM_170987, NM_170988
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170988 NCBI Caenorhabditis elegans C27D6.4b (C27D6.4) mRNA, complete cds. None
C27D6.4c ENSEMBL cdna:known chromosome:CEL140:II:5179022:5186255:-1 gene:C27D6.4 A 
C27D6.4a ENSEMBL cdna:known chromosome:CEL140:II:5179659:5181070:-1 gene:C27D6.4 None
C27D6.4b.1 ENSEMBL cdna:known chromosome:CEL140:II:5179659:5187550:-1 gene:C27D6.4 None
C27D6.4b.2 ENSEMBL cdna:known chromosome:CEL140:II:5179659:5187552:-1 gene:C27D6.4 None
SNAP00000035743 ENSEMBL cdna:SNAP chromosome:CEL140:II:5179659:5180595:-1 None
SNAP00000035744 ENSEMBL cdna:SNAP chromosome:CEL140:II:5180787:5181053:-1 None
NM_170987 NCBI Caenorhabditis elegans C27D6.4a (C27D6.4) mRNA, complete cds. None
NM_170989 NCBI Caenorhabditis elegans C27D6.4c (C27D6.4) mRNA, complete cds. A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026825 4/11 Cross Hyb Matching Probes None
SNAP00000035742 4/11 Cross Hyb Matching Probes None
GENEFINDER00000035749 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5177356-5181051(-) 93.9 100.0
Public Domain and Genome References
Ensembl C27D6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740986 C27D6.4b [Caenorhabditis elegans] gb|AAN63446.1| Hypothetical protein C27D6.4b [Caenorhabditis elegans] 1.0E-129
blast NP_740985 C27D6.4a [Caenorhabditis elegans] gb|AAN63445.1| Hypothetical protein C27D6.4a [Caenorhabditis elegans] 1.0E-122
blast T15656 hypothetical protein C27D6.4 - Caenorhabditis elegans 1.0E-122
blast NP_740987 C27D6.4c [Caenorhabditis elegans] gb|AAN63447.1| Hypothetical protein C27D6.4c [Caenorhabditis elegans] 1.0E-107
blast CAE59060 Hypothetical protein CBG02345 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 8.1E-15
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 8.1E-15
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 8.1E-15
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 8.1E-15
Sequence
Target Sequence 
>C. ELEGANS:188956_AT
gctttctgcacaagaatctcgccgaaaaagaaaggagtacattgatgcccttgagggtcg
attgcactgttttagtgaggagaacaaatcccttaaaaagcaagttcaccaattggaagc
atcaaatcgtgatcttcagcagaagctgcatcaatacgaaagtaaagaaaaaatgcccag
accttttttgtttgaaaaaaattgtcgtatcgagaccggataccgtattttcgatacaaa
atcatatattatacttttccgaaaatcttcaataccgattacagtaatttattgtctttg
tggtgagacctttgcgcgtaagatagtgcgaagagttccatttttagacgacaatattat
ccaacaagaaatgcttttccgattctttttattaattgtcgctatcctcaccattgtgaa
tgcaggcgagccagaacatggagctcctccaccaaatggaacagatatgggaaatgatac
aatgctagaagcacgagctgggggaccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTCTGCACAAGAATCTCGCCGA 104 305 510 Antisense
GAGTACATTGATGCCCTTGAGGGTC 412 385 544 Antisense
TGAGGGTCGATTGCACTGTTTTAGT 124 567 561 Antisense
GAGACCGGATACCGTATTTTCGATA 554 393 721 Antisense
TGTGGTGAGACCTTTGCGCGTAAGA 575 553 808 Antisense
GCGAAGAGTTCCATTTTTAGACGAC 372 277 837 Antisense
GAAATGCTTTTCCGATTCTTTTTAT 62 363 877 Antisense
TTATTAATTGTCGCTATCCTCACCA 360 679 898 Antisense
GCGAGCCAGAACATGGAGCTCCTCC 78 291 935 Antisense
GAGCTCCTCCACCAAATGGAACAGA 548 387 950 Antisense
TAGAAGCACGAGCTGGGGGACCACC 10 651 995 Antisense
Sequence Source Affymetrix Proprietary Database