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[188954_s_at] helicase like /// helicase

Description C11G6.2 /REP_DB=WormBase Gene ID /WP=CE05256 /TR=Q17908 /GB=CAA94112.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=helicase like
Cluster 6grp_total > 72      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 0.8
(-3)
A 		7.7
(-0.4)
A 		1.3
(-2.8)
A 		16.6
(3)
A 		16
B 12.9
(0.8)
A 		2.7
(-3)
A 		6
(-1.8)
A 		18.6
(3)
A 		16
C 8.1
(-0.2)
A 		3
(-3)
A 		13.9
(3)
A 		9.7
(0.7)
A 		11
avr 7.3
(-1.4) 		4.5
(-3) 		7.1
(-1.5) 		15
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.2
(-1.4)
A 		0.7
(-3)
A 		21.9
(3)
A 		8.3
(-0.8)
A 		14.8
(1)
A 		3.6
(-2.2)
A 		21
B 4.1
(-1.2)
A 		1
(-2.9)
A 		0.9
(-3)
A 		9.5
(1.7)
A 		11.8
(3)
A 		0.9
(-3)
A 		11
C 3.4
(-2.5)
A 		9.1
(0.9)
A 		12.4
(2.8)
A 		12.7
(3)
A 		2.5
(-3)
A 		8.2
(0.4)
A 		10
avr 4.6
(-2.3) 		3.6
(-3) 		11.7
(3) 		10.2
(1.9) 		9.7
(1.5) 		4.2
(-2.6) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.3
(-3)
A 		1.7
(1)
A 		0.3
(-3)
A 		2.4
(3)
A 		2
B 4.1
(3)
A 		0.7
(-3)
A 		1.4
(-1.8)
A 		4
(2.8)
A 		3
C 2.7
(-0.3)
A 		0.9
(-3)
A 		4.9
(3)
A 		1.6
(-2)
A 		4
avr 2.4
(1.9) 		1.1
(-3) 		2.2
(1.1) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.1
(-1.9)
A 		0.3
(-3)
A 		4.8
(3)
A 		2.1
(-0.6)
A 		4.5
(2.6)
A 		0.9
(-2.2)
A 		5
B 1.4
(-1.4)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		2.5
(0)
A 		4.8
(3)
A 		0.3
(-2.9)
A 		5
C 1.2
(-2)
A 		2.8
(2)
A 		3.2
(3)
A 		2.6
(1.5)
A 		0.8
(-3)
A 		2.8
(2)
A 		2
avr 1.2
(-2.7) 		1.1
(-3) 		2.7
(1.2) 		2.4
(0.4) 		3.4
(3) 		1.3
(-2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188954_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17743
Sequence Type Exemplar sequence
Representative Public ID C11G6.2 NCBI
Target Description C11G6.2 /REP_DB=WormBase Gene ID /WP=CE05256 /TR=Q17908 /GB=CAA94112.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=helicase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078255(11), NM_075419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078255 NCBI Caenorhabditis elegans C11G6.2 (C11G6.2) mRNA, complete cds. 11/11 None
NM_075419 NCBI Caenorhabditis elegans Y116F11A.1 (helicase) mRNA, complete cds. 11/11 A 
SNAP00000017813 ENSEMBL cdna:SNAP chromosome:CEL140:V:19728793:19729997:1 11/11 None
GENEFINDER00000017817 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19727036:19733073:1 11/11 None
SNAP00000002966 ENSEMBL cdna:SNAP chromosome:CEL140:X:16328996:16329911:1 11/11 None
Y116F11A.1 ENSEMBL cdna:known chromosome:CEL140:V:19728586:19730163:1 gene:Y116F11A.1 11/11 A 
C11G6.2 ENSEMBL cdna:known chromosome:CEL140:X:16329131:16329911:1 gene:C11G6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002972 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16329130-16329911(+) 100.0 100.0
Public Domain and Genome References
Gene Title helicase like
helicase
Ensembl Y116F11A.1
C11G6.2
Entrez Gene 180297 Entrez gene
182520 Entrez gene
SwissProt Q17908 EMBL-EBI
Q9U3T4 EMBL-EBI
WormBase CE05256 Wormbase
CE24155 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60760 Hypothetical protein Y116F11A.1 [Caenorhabditis elegans] ref|NP_507820.1| Y116F11A.1 [Caenorhabditis elegans] 1.0E-98
blast CAA94112 Hypothetical protein C11G6.2 [Caenorhabditis elegans] ref|NP_510656.1| C11G6.2 [Caenorhabditis elegans] 3.0E-89
blast CAA94112 Hypothetical protein C11G6.2 [Caenorhabditis elegans] ref|NP_510656.1| C11G6.2 [Caenorhabditis elegans] 5.0E-89
blast CAB60760 Hypothetical protein Y116F11A.1 [Caenorhabditis elegans] ref|NP_507820.1| Y116F11A.1 [Caenorhabditis elegans] 7.0E-87
blast CAB60760 Hypothetical protein Y116F11A.1 [Caenorhabditis elegans] ref|NP_507820.1| Y116F11A.1 [Caenorhabditis elegans] 2.0E-70
blast CAA94112 Hypothetical protein C11G6.2 [Caenorhabditis elegans] ref|NP_510656.1| C11G6.2 [Caenorhabditis elegans] 3.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017817 1 160-182
SNAP00000002966 1 21-40
Sequence
Target Sequence 
>C. ELEGANS:188954_S_AT
gttttgatgactggatctaccgggaaagcagcaaaagcgatcggagggcgcacactgcat
tgcacaattggcctaccgaacgaaaaacctgaagatctggaaagcttgaaatctcaggca
ttcatctacgccacgacacgacttattatcatcgatgaaatcacactcctagcgagctgg
cacctggatgcgacggacatggttctcaaaagaacgcagaagaggacggatgcgctcttc
ggcgggctatcgatcatcctcgtgggggatcttcgacagctgaacttggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGATGACTGGATCTACCGGGA 325 447 175 Antisense
GATCTACCGGGAAAGCAGCAAAAGC 635 417 188 Antisense
AAAAGCGATCGGAGGGCGCACACTG 357 131 207 Antisense
GGCGCACACTGCATTGCACAATTGG 445 541 221 Antisense
TGCACAATTGGCCTACCGAACGAAA 292 577 235 Antisense
TATCATCGATGAAATCACACTCCTA 56 659 321 Antisense
TGAAATCACACTCCTAGCGAGCTGG 181 573 330 Antisense
TGGATGCGACGGACATGGTTCTCAA 419 543 359 Antisense
GAAGAGGACGGATGCGCTCTTCGGC 582 337 393 Antisense
CGATCATCCTCGTGGGGGATCTTCG 128 249 425 Antisense
GGATCTTCGACAGCTGAACTTGGGA 342 509 441 Antisense
Sequence Source Affymetrix Proprietary Database