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[188948_at] Zinc finger

Description F26A10.2 /REP_DB=WormBase Gene ID /WP=CE02692 /TR=Q19807 /GB=AAA68307.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger
Cluster 6grp_total > 01      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 37.2
(-3)
A 		45
(-2)
A 		58.2
(-0.4)
A 		84.9
(3)
A 		48
B 57.1
(-1.2)
A 		97.4
(3)
A 		39.6
(-3)
A 		69.7
(0.1)
A 		58
C 63.4
(-2.4)
P 		138
(3)
A 		55.3
(-3)
A 		97.9
(0.1)
A 		83
avr 52.6
(-2.8) 		93.5
(3) 		51
(-3) 		84.2
(1.7) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 50
(-0.5)
A 		68.3
(1.4)
A 		26.7
(-3)
A 		38.5
(-1.7)
A 		82.9
(3)
A 		46.5
(-0.9)
A 		56
B 73.5
(3)
A 		65.8
(1.8)
A 		55
(0.2)
A 		34.2
(-3)
A 		65.8
(1.8)
A 		51
(-0.4)
A 		39
C 53.2
(-0.6)
A 		73.3
(3)
A 		49.2
(-1.3)
M 		43.3
(-2.3)
A 		39.5
(-3)
A 		52.7
(-0.7)
A 		34
avr 58.9
(1) 		69.1
(3) 		43.6
(-2) 		38.7
(-3) 		62.7
(1.7) 		50.1
(-0.8) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 13.5
(1.1)
A 		9.8
(-3)
A 		15.2
(3)
A 		12.4
(-0.1)
A 		5
B 18.2
(0.6)
A 		24.1
(3)
A 		9.2
(-3)
A 		14.9
(-0.7)
A 		15
C 21
(-1.8)
P 		39.7
(3)
A 		19.3
(-2.3)
A 		16.5
(-3)
A 		23
avr 17.6
(-1.2) 		24.5
(3) 		14.6
(-3) 		14.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9.2
(-1.9)
A 		24.3
(2.8)
A 		5.8
(-3)
A 		9.8
(-1.8)
A 		25
(3)
A 		11.3
(-1.3)
A 		19
B 25.6
(2.6)
A 		21.9
(1.3)
A 		13.4
(-1.5)
A 		9.1
(-3)
A 		26.8
(3)
A 		19
(0.4)
A 		18
C 19.7
(1.8)
A 		22.4
(3)
A 		12.5
(-1.3)
M 		8.7
(-3)
A 		12.8
(-1.2)
A 		17.6
(0.9)
A 		14
avr 18.2
(0.9) 		22.9
(3) 		10.6
(-2.4) 		9.2
(-3) 		21.5
(2.4) 		16
(-0) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16275
Sequence Type Exemplar sequence
Representative Public ID F26A10.2 NCBI
Target Description F26A10.2 /REP_DB=WormBase Gene ID /WP=CE02692 /TR=Q19807 /GB=AAA68307.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076889(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076889 NCBI Caenorhabditis elegans F26A10.2 (F26A10.2) mRNA, complete cds. 11/11 None
SNAP00000019809 ENSEMBL cdna:SNAP chromosome:CEL140:X:7632033:7633248:-1 11/11 None
GENEFINDER00000019811 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7632033:7637114:-1 11/11 None
F26A10.2 ENSEMBL cdna:known chromosome:CEL140:X:7632033:7637027:-1 gene:F26A10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7632031-7637026(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger
Ensembl F26A10.2
Entrez Gene 181025 Entrez gene
SwissProt Q19807 EMBL-EBI
WormBase CE02692 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68307 Hypothetical protein F26A10.2 [Caenorhabditis elegans] ref|NP_509290.1| F26A10.2 [Caenorhabditis elegans] 0.0
blast CAE70253 Hypothetical protein CBG16748 [Caenorhabditis briggsae] 0.0
blast AAA68307 Hypothetical protein F26A10.2 [Caenorhabditis elegans] ref|NP_509290.1| F26A10.2 [Caenorhabditis elegans] 1.0E-173
blast CAE70253 Hypothetical protein CBG16748 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.7E-5
Sequence
Target Sequence 
>C. ELEGANS:188948_AT
tggattccgatcacgtctgaactcagttactcattcctgctctccagattcattttctga
ttctcattgtgactccccaccaagaaaactttccggtggaggcggacttggatcatcatc
gtttctcgggggatacggaactggtccggcttatggccaacagatgatctacgacaaaag
cttggatgacattgaatgtgatagttatggaatgttcaatgatgccccagctatgtacaa
gcagcaaataatttcactccaaaacaaagagttccgaggacatgggattacgatagctcc
attggttcagtatcacatgcagccaatgtcaatgaaagatttttcaagtcaaacctcttc
gtctcaaatagtagtttcatcatcagagtgttttgacaatgacaatcgctcatggaagaa
ttatggctatgacatgccaccaataaaaacttctgaagtgaaagagctggctgccgtttt
gatgacgatctacctatgtcatgctgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATTCCGATCACGTCTGAACTCA 207 551 1317 Antisense
TGAACTCAGTTACTCATTCCTGCTC 626 573 1334 Antisense
TCATTGTGACTCCCCACCAAGAAAA 123 619 1380 Antisense
GAGGCGGACTTGGATCATCATCGTT 568 405 1415 Antisense
ATCATCATCGTTTCTCGGGGGATAC 642 29 1428 Antisense
ACTGGTCCGGCTTATGGCCAACAGA 555 95 1456 Antisense
GTTCAATGATGCCCCAGCTATGTAC 656 445 1530 Antisense
TAGCTCCATTGGTTCAGTATCACAT 19 653 1610 Antisense
TCAAACCTCTTCGTCTCAAATAGTA 320 629 1665 Antisense
AGCTGGCTGCCGTTTTGATGACGAT 341 81 1781 Antisense
ACGATCTACCTATGTCATGCTGCAG 571 91 1801 Antisense
Sequence Source Affymetrix Proprietary Database