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[188947_at] C-type lectin

Description T09F5.9 /REP_DB=WormBase Gene ID /WP=CE13537 /TR=O18076 /GB=CAB05809.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 71      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 45      6grp_total > 71      4grp_total > 54      6grp_highest_sub > 04_05      6grp_cgc > 75      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2754
1 2 3 4 range
A 2593.4
(3)
P 		1191
(-0.4)
P 		979.4
(-0.9)
P 		112.9
(-3)
P 		2481
B 2804.3
(3)
P 		1498
(0.2)
P 		1257
(-0.4)
P 		50.4
(-3)
P 		2754
C 2752.2
(3)
P 		1433.5
(0)
P 		1130.3
(-0.7)
P 		88.1
(-3)
P 		2664
avr 2716.6
(3) 		1374.2
(-0.1) 		1122.2
(-0.6) 		83.8
(-3) 		2633

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3172
1 2 3 4 5 6 range
A 622.5
(-3)
P 		1825
(-0.7)
P 		2949.4
(1.4)
P 		3794.7
(3)
P 		1854.3
(-0.7)
P 		1163.7
(-2)
P 		3172
B 870.4
(-3)
P 		2585.2
(1.9)
P 		2225.2
(0.9)
P 		2958.4
(3)
P 		2248.1
(1)
P 		1447.6
(-1.3)
P 		2088
C 842.1
(-3)
P 		2191.3
(0.3)
P 		1394.4
(-1.6)
P 		3279.1
(3)
P 		2177.1
(0.3)
P 		1442.6
(-1.5)
P 		2437
avr 778.3
(-3) 		2200.5
(0.3) 		2189.7
(0.3) 		3344.1
(3) 		2093.2
(0.1) 		1351.3
(-1.7) 		2566
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 934
1 2 3 4 range
A 944.3
(3)
P 		258.5
(-1.4)
P 		256
(-1.5)
P 		16.5
(-3)
P 		928
B 894.3
(3)
P 		370
(-0.6)
P 		291.3
(-1.1)
P 		10.7
(-3)
P 		884
C 911.1
(3)
P 		412.2
(-0.3)
P 		393.9
(-0.5)
P 		14.8
(-3)
P 		896
avr 916.6
(3) 		346.9
(-0.8) 		313.7
(-1) 		14
(-3) 		903

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 848
1 2 3 4 5 6 range
A 114.8
(-3)
P 		649.1
(0.8)
P 		642.3
(0.7)
P 		962.4
(3)
P 		559.6
(0.1)
P 		283.3
(-1.8)
P 		848
B 302.9
(-3)
P 		860.5
(2.5)
P 		540.3
(-0.7)
P 		783.6
(1.7)
P 		913.4
(3)
P 		539.8
(-0.7)
P 		611
C 312.1
(-3)
P 		668.6
(2.5)
P 		354.9
(-2.3)
P 		659.4
(2.3)
P 		704.5
(3)
P 		482.9
(-0.4)
P 		392
avr 243.3
(-3) 		726.1
(2.2) 		512.5
(-0.1) 		801.8
(3) 		725.8
(2.2) 		435.3
(-0.9) 		559
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12952
Sequence Type Exemplar sequence
Representative Public ID T09F5.9 NCBI
Target Description T09F5.9 /REP_DB=WormBase Gene ID /WP=CE13537 /TR=O18076 /GB=CAB05809.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074343 NCBI Caenorhabditis elegans C-type LECtin family member (clec-47) (clec-47) mRNA, complete cds. 11/11 None
T09F5.9 ENSEMBL cdna:known chromosome:CEL140:V:15178348:15178876:1 gene:T09F5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036443 5/11 Cross Hyb Matching Probes None
GENEFINDER00000036453 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15178347-15178876(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin
Gene Symbol clec-47
Ensembl T09F5.9
Entrez Gene 180025 Entrez gene
SwissProt O18076 EMBL-EBI
WormBase CE13537 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05809 Hypothetical protein T09F5.9 [Caenorhabditis elegans] ref|NP_506744.1| C-type LECtin family member (clec-47) [Caenorhabditis elegans] 2.0E-90
blast NP_504977 C-type LECtin family member (clec-45) [Caenorhabditis elegans] gb|AAG24036.1| C-type lectin protein 45 [Caenorhabditis elegans] 5.0E-40
blast CAB02691 Hypothetical protein B0365.6 [Caenorhabditis elegans] ref|NP_506271.1| C-type LECtin family member (clec-41) [Caenorhabditis elegans] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.9E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506744.1 1 7-29
T09F5.9 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:188947_AT
acgtatctcatttttgtacttgcaatttttatatttccaattgcttcaatttcgtgtcca
agtggctttacacttctagtttctacatcccgttgtgcaaagtttatttctggcgagctg
aattatgacggagcaacattgtcttgcaattcttctgggggaaagttgatatcaattcat
aatgcaatcgacaatcgtgtaatgatgcagtttgcgaattcatcaataaccaacgataat
tacaattattggctcggactcaagtgctcagaaactggaaatccaaacgcctgtgcttgg
gcagattcgactaaatttagctacagtggatttgcaaaagcttatccaaacacagggtat
ggaaactgtgtatttgttgagacagcagggaatagtgctggacagtggttcagtgctacg
tgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTATCTCATTTTTGTACTTGCAA 72 95 25 Antisense
GCTTCAATTTCGTGTCCAAGTGGCT 647 303 67 Antisense
GTGGCTTTACACTTCTAGTTTCTAC 126 485 86 Antisense
TAGTTTCTACATCCCGTTGTGCAAA 39 655 101 Antisense
GTGCAAAGTTTATTTCTGGCGAGCT 641 479 119 Antisense
AGCAACATTGTCTTGCAATTCTTCT 173 77 156 Antisense
TATTGGCTCGGACTCAAGTGCTCAG 432 661 271 Antisense
GAAATCCAAACGCCTGTGCTTGGGC 480 359 302 Antisense
GCCTGTGCTTGGGCAGATTCGACTA 675 281 313 Antisense
AAAGCTTATCCAAACACAGGGTATG 684 121 361 Antisense
GACAGTGGTTCAGTGCTACGTGCAA 84 369 425 Antisense
Sequence Source Affymetrix Proprietary Database