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[188946_at]

Description T24H10.2 /REP_DB=WormBase Gene ID /WP=CE16461 /TR=Q22753 /GB=CAA90948.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BZIP protein
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 84      6grp_total > 38      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 427.9
(-1.7)
P 		346.4
(-3)
P 		448.6
(-1.3)
P 		713.8
(3)
P 		367
B 443.9
(-2)
P 		375.3
(-3)
P 		470
(-1.7)
P 		806.7
(3)
P 		431
C 491.4
(-1.1)
P 		333.4
(-3)
P 		461.4
(-1.4)
P 		824.4
(3)
P 		491
avr 454.4
(-1.6) 		351.7
(-3) 		460
(-1.5) 		781.6
(3) 		430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 502
1 2 3 4 5 6 range
A 558.9
(1)
P 		464.4
(-1.6)
P 		632.8
(3)
P 		411.9
(-3)
P 		472.9
(-1.3)
P 		578.5
(1.5)
P 		221
B 733.7
(3)
P 		592
(-0.2)
P 		563.7
(-0.8)
P 		465.5
(-3)
P 		539.3
(-1.3)
P 		637
(0.8)
P 		268
C 826.1
(3)
P 		594.5
(0.2)
P 		324.1
(-3)
P 		502.2
(-0.9)
P 		531.7
(-0.5)
P 		676.8
(1.2)
P 		502
avr 706.2
(3) 		550.3
(-0.8) 		506.9
(-1.9) 		459.9
(-3) 		514.6
(-1.7) 		630.8
(1.2) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 155.8
(3)
P 		75.2
(-3)
P 		117.3
(0.1)
P 		104.5
(-0.8)
P 		81
B 141.6
(0.7)
P 		92.7
(-3)
P 		108.9
(-1.8)
P 		171.9
(3)
P 		79
C 162.7
(3)
P 		95.8
(-3)
P 		160.8
(2.8)
P 		139
(0.9)
P 		67
avr 153.4
(3) 		87.9
(-3) 		129
(0.8) 		138.5
(1.6) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 103
(-3)
P 		165.2
(3)
P 		137.8
(0.4)
P 		104.5
(-2.9)
P 		142.7
(0.8)
P 		140.8
(0.6)
P 		62
B 255.3
(3)
P 		197.1
(0.4)
P 		136.9
(-2.4)
P 		123.3
(-3)
P 		219.1
(1.4)
P 		237.5
(2.2)
P 		132
C 306.2
(3)
P 		181.4
(-0.3)
P 		82.5
(-3)
P 		101
(-2.5)
P 		172.1
(-0.6)
P 		226.6
(0.9)
P 		224
avr 221.5
(3) 		181.2
(0.8) 		119.1
(-2.5) 		109.6
(-3) 		178
(0.7) 		201.6
(1.9) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2769
Sequence Type Exemplar sequence
Representative Public ID T24H10.2 NCBI
Target Description T24H10.2 /REP_DB=WormBase Gene ID /WP=CE16461 /TR=Q22753 /GB=CAA90948.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=BZIP protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027197 NCBI Caenorhabditis elegans T24H10.7c (T24H10.7) mRNA, complete cds. 11/11 None
T24H10.7c ENSEMBL cdna:known chromosome:CEL140:II:9130741:9132108:1 gene:T24H10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027195 8/11 Cross Hyb Matching Probes None
NM_001027196 8/11 Cross Hyb Matching Probes None
SNAP00000021896 8/11 Cross Hyb Matching Probes None
GENEFINDER00000021897 8/11 Cross Hyb Matching Probes None
T24H10.7a 8/11 Cross Hyb Matching Probes None
T24H10.7b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174452 3 1 NM_001027195 180818_at (11)
NM_001027196 180818_at (11)
NM_001027197 188946_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9130742-9131771(+) 100.0 100.0
Public Domain and Genome References
Ensembl T24H10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90948 Hypothetical protein T24H10.7c [Caenorhabditis elegans] ref|NP_001022368.1| T24H10.7c [Caenorhabditis elegans] 1.0E-53
blast CAI46586 Hypothetical protein T24H10.7b [Caenorhabditis elegans] ref|NP_001022367.1| T24H10.7b [Caenorhabditis elegans] 8.0E-42
blast CAB76416 Hypothetical protein T24H10.7a [Caenorhabditis elegans] ref|NP_001022366.1| T24H10.7a [Caenorhabditis elegans] 8.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 4.1E-7
Sequence
Target Sequence 
>C. ELEGANS:188946_AT
atggtctggtcgtcggagacttttggtatgacacctgaagagcaaattgaatggatggca
ctcgatgaccaagaaaagaagaagcttgagagaaagagagctcgcaataggcaagccgcc
accaaatgccgtcaaaagaaaatggatcgcatcaaggagctggaagaacaggttctccac
gagaagcaccgcggtcaacgccttgacgctgaactcctcgagctcaacagagctcttgaa
catttcagaagaacggttgaacatcactcgggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTCTGGTCGTCGGAGACTTTTG 566 45 13 Antisense
GGAGACTTTTGGTATGACACCTGAA 78 519 27 Antisense
GAATGGATGGCACTCGATGACCAAG 106 333 61 Antisense
GAGAGCTCGCAATAGGCAAGCCGCC 256 395 108 Antisense
GCAATAGGCAAGCCGCCACCAAATG 653 321 116 Antisense
CCGCCACCAAATGCCGTCAAAAGAA 47 261 128 Antisense
TGGATCGCATCAAGGAGCTGGAAGA 488 547 155 Antisense
ACAGGTTCTCCACGAGAAGCACCGC 265 107 180 Antisense
TGAACTCCTCGAGCTCAACAGAGCT 683 573 222 Antisense
CAACAGAGCTCTTGAACATTTCAGA 8 189 237 Antisense
GAACGGTTGAACATCACTCGGGAAA 644 345 263 Antisense
Sequence Source Affymetrix Proprietary Database