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[188945_at] dehydrogenase

Description F20G2.2 /REP_DB=WormBase Gene ID /WP=CE09505 /TR=Q93545 /GB=CAB02087.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 35      6grp_total > 62      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3023
1 2 3 4 range
A 1620.2
(-0.1)
P 		2507.2
(1.7)
P 		3184.7
(3)
P 		162.2
(-3)
P 		3023
B 1836.5
(0.3)
P 		2697.7
(2.1)
P 		3115.5
(3)
P 		282.3
(-3)
P 		2833
C 1597.9
(0.1)
P 		2671.4
(2.7)
P 		2800.7
(3)
P 		271.5
(-3)
P 		2529
avr 1684.9
(0.1) 		2625.4
(2.1) 		3033.6
(3) 		238.7
(-3) 		2795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3328
1 2 3 4 5 6 range
A 2692.7
(-0.4)
P 		2990.5
(0.2)
P 		4460.8
(3)
P 		3809.9
(1.7)
P 		3202.1
(0.6)
P 		1337.6
(-3)
P 		3123
B 2595.2
(-1.2)
P 		3344
(0.3)
P 		4665.8
(3)
P 		3742.4
(1.1)
P 		3078.4
(-0.2)
P 		1699.3
(-3)
P 		2967
C 2251.8
(-2.2)
P 		3161.4
(-0)
P 		4377.4
(2.9)
P 		4405.5
(3)
P 		2947.9
(-0.5)
P 		1928.9
(-3)
P 		2477
avr 2513.2
(-1.2) 		3165.3
(0.2) 		4501.3
(3) 		3985.9
(1.9) 		3076.1
(-0) 		1655.3
(-3) 		2846
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 952
1 2 3 4 range
A 589.9
(1.2)
P 		544.2
(0.9)
P 		832.5
(3)
P 		23.7
(-3)
P 		809
B 585.7
(1.8)
P 		666.3
(2.5)
P 		721.9
(3)
P 		60.2
(-3)
P 		662
C 529
(0.1)
P 		768.1
(1.7)
P 		976.1
(3)
P 		45.8
(-3)
P 		930
avr 568.2
(0.9) 		659.5
(1.6) 		843.5
(3) 		43.2
(-3) 		800

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 925
1 2 3 4 5 6 range
A 496.4
(-1.6)
P 		1063.6
(3)
P 		971.5
(2.3)
P 		966.3
(2.2)
P 		966.3
(2.2)
P 		325.7
(-3)
P 		738
B 903
(-0.4)
P 		1113.1
(1.7)
P 		1133
(1.9)
P 		991.2
(0.5)
P 		1250.7
(3)
P 		633.7
(-3)
P 		617
C 834.6
(-0.6)
P 		964.6
(1.1)
P 		1114.1
(3)
P 		885.9
(0.1)
P 		953.9
(0.9)
P 		645.7
(-3)
P 		468
avr 744.7
(-0.7) 		1047.1
(2.7) 		1072.9
(3) 		947.8
(1.6) 		1057
(2.8) 		535
(-3) 		538
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188945_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13929
Sequence Type Exemplar sequence
Representative Public ID F20G2.2 NCBI
Target Description F20G2.2 /REP_DB=WormBase Gene ID /WP=CE09505 /TR=Q93545 /GB=CAB02087.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074006 NCBI Caenorhabditis elegans F20G2.2 (dehydrogenase) mRNA, complete cds. 11/11 None
SNAP00000006706 ENSEMBL cdna:SNAP chromosome:CEL140:V:13757638:13758983:-1 11/11 None
GENEFINDER00000006717 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13757638:13758983:-1 11/11 None
F20G2.2 ENSEMBL cdna:known chromosome:CEL140:V:13757611:13758999:-1 gene:F20G2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13757637-13758983(-) 100.0 100.0
Public Domain and Genome References
Gene Title dehydrogenase
Ensembl F20G2.2
Entrez Gene 184743 Entrez gene
SwissProt Q93545 EMBL-EBI
WormBase CE09505 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627015_AT sniffer dm
DROSGENOME1:154766_AT sniffer dm
CHICKEN:GGA.11671.1.S1_A_AT similar to CG10964-PA gga
CHICKEN:GGA.11671.2.S1_AT similar to CG10964-PA gga
CHICKEN:GGAAFFX.25168.2.S1_S_AT similar to CG10964-PA gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02087 Hypothetical protein F20G2.2 [Caenorhabditis elegans] ref|NP_506407.1| F20G2.2 [Caenorhabditis elegans] 1.0E-136
blast CAE66249 Hypothetical protein CBG11493 [Caenorhabditis briggsae] 1.0E-117
blast CAB02086 Hypothetical protein F20G2.1 [Caenorhabditis elegans] ref|NP_506406.1| F20G2.1 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.7E-16
Sequence
Target Sequence 
>C. ELEGANS:188945_AT
tctcgtctacacattttgccattggacattgattgtgacgagtcaatcagcaaactgtac
gcagaggttgaaaagctggttggcgaagacggtctaactgttcttctcaacaatgctggc
attctgctcccttatgatgtcgaaggagaaaagaaccgtaaaacattgatccgtcagctt
gagactaattccgtctcaactgcactcatcactcaagaatttctcccattgctcaaaaaa
gctgcagccaagaatggaggagatggttattcaattaaccgagctgcaattgttaatatt
tcttctactgccgcatcagttgagaagattgatggaaccttcaacggaccgctagttgcc
taccgtatgagcaagtcggctctgaactcttttgccaaatcctgttcaattgatctcgcc
aagtatcatatcttggtcacctcattctgcccaggatgggttaaaactggtatgggaggt
gcaaatgcaatgcttgagattgaagatgctacgaagaccctctccgacaacattctcacc
ctcggaaatgcccatcacggagcatacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGTCTACACATTTTGCCATTGG 619 611 163 Antisense
GTTCTTCTCAACAATGCTGGCATTC 117 445 262 Antisense
CATTCTGCTCCCTTATGATGTCGAA 315 217 282 Antisense
AGACTAATTCCGTCTCAACTGCACT 513 69 344 Antisense
AAGAATTTCTCCCATTGCTCAAAAA 19 153 377 Antisense
TTTCTTCTACTGCCGCATCAGTTGA 137 673 461 Antisense
GAACCTTCAACGGACCGCTAGTTGC 380 345 497 Antisense
CAAGTCGGCTCTGAACTCTTTTGCC 241 185 534 Antisense
AATCCTGTTCAATTGATCTCGCCAA 634 167 560 Antisense
TCATATCTTGGTCACCTCATTCTGC 584 619 588 Antisense
AAATGCCCATCACGGAGCATACCTC 326 119 708 Antisense
Sequence Source Affymetrix Proprietary Database