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[188944_at] transposase

Description H28G03.4 /REP_DB=WormBase Gene ID /WP=CE11604 /TR=Q9TXP4 /GB=AAC67403.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 18      4grp_total > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 10.3
(-2.7)
A 		6.5
(-3)
A 		19.6
(-1.9)
A 		78.6
(3)
A 		72
B 4.8
(-2.4)
A 		7.5
(3)
A 		7.4
(2.8)
A 		4.5
(-3)
A 		3
C 7.7
(-2.3)
A 		29.2
(0.4)
A 		2.6
(-3)
A 		49
(3)
A 		46
avr 7.6
(-3) 		14.4
(-1.9) 		9.9
(-2.6) 		44
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 18.3
(3)
A 		2.2
(-3)
A 		4.5
(-2.1)
A 		2.5
(-2.9)
A 		7.7
(-1)
A 		8.9
(-0.5)
A 		16
B 17.1
(3)
A 		4.9
(-2.2)
A 		6.1
(-1.6)
A 		7.2
(-1.2)
A 		2.9
(-3)
A 		4.1
(-2.5)
A 		14
C 3.4
(-2.9)
A 		5.7
(0.5)
A 		3.3
(-3)
A 		7.4
(3)
A 		4.3
(-1.5)
A 		5.5
(0.2)
A 		4
avr 12.9
(3) 		4.3
(-3) 		4.6
(-2.8) 		5.7
(-2) 		5
(-2.5) 		6.2
(-1.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.7
(-1.6)
A 		1.4
(-3)
A 		5.1
(-0.8)
A 		11.5
(3)
A 		10
B 1.5
(0.8)
A 		1.8
(3)
A 		1.7
(2.3)
A 		1
(-3)
A 		1
C 2.6
(-1.6)
A 		8.4
(3)
A 		0.9
(-3)
A 		8.3
(2.9)
A 		8
avr 2.6
(-3) 		3.9
(-1.2) 		2.6
(-3) 		6.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.4
(3)
A 		0.8
(-2.6)
A 		1
(-2.1)
A 		0.6
(-3)
A 		2.3
(0.6)
A 		2.2
(0.4)
A 		3
B 6
(3)
A 		1.6
(-2.5)
A 		1.5
(-2.6)
A 		1.9
(-2.1)
A 		1.2
(-3)
A 		1.5
(-2.6)
A 		5
C 1.3
(0)
A 		1.7
(2.4)
A 		0.8
(-3)
A 		1.5
(1.2)
A 		1.4
(0.6)
A 		1.8
(3)
A 		1
avr 3.6
(3) 		1.4
(-2.3) 		1.1
(-3) 		1.3
(-2.5) 		1.6
(-1.8) 		1.8
(-1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16736
Sequence Type Exemplar sequence
Representative Public ID H28G03.4 NCBI
Target Description H28G03.4 /REP_DB=WormBase Gene ID /WP=CE11604 /TR=Q9TXP4 /GB=AAC67403.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076486 NCBI Caenorhabditis elegans H28G03.4 (transposase) mRNA, complete cds. 11/11 A 
H28G03.4 ENSEMBL cdna:known chromosome:CEL140:X:5222374:5224463:-1 gene:H28G03.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008044 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11645349-11646483(+) 63.26 63.26
chrI:9308776-9309909(+) 63.19 63.19
chrI:1534631-1535765(+) 63.19 63.19
chrIV:17169531-17170665(+) 63.33 63.33
chrIV:1511351-1512484(+) 63.26 63.26
chrIV:13947166-13948299(+) 62.97 62.97
chrV:18533653-18534785(+) 63.33 63.33
chrX:3735459-3736592(+) 63.26 63.26
chrV:16633930-16635064(-) 63.33 63.33
chrX:5222374-5224464(-) 100.0 100.0
Public Domain and Genome References
Gene Title transposase
Ensembl H28G03.4
Entrez Gene 186793 Entrez gene
SwissProt Q9TXP4 EMBL-EBI
WormBase CE11604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67403 Hypothetical protein H28G03.4 [Caenorhabditis elegans] ref|NP_508887.1| H28G03.4 [Caenorhabditis elegans] 0.0
blast NP_508643 T14G12.1 [Caenorhabditis elegans] gb|AAA82435.1| Hypothetical protein T14G12.1 [Caenorhabditis elegans] 1.0E-155
blast NP_503046 C52D10.5 [Caenorhabditis elegans] gb|AAK77207.1| Hypothetical protein C52D10.5 [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 0.0109999999403954
Sequence
Target Sequence 
>C. ELEGANS:188944_AT
gcctcacgggaactacttaccataattttgactcaccctgtatggagtaaggtgtggaac
gagcttgaaattccttacttgcgtgccacggttgatgcgtttccgaaacgtgtgcgggtc
tgtatcgaggcggatggagatatctttgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCACGGGAACTACTTACCATAA 386 281 1207 Antisense
CTTACCATAATTTTGACTCACCCTG 654 215 1222 Antisense
TGACTCACCCTGTATGGAGTAAGGT 66 567 1235 Antisense
GGAGTAAGGTGTGGAACGAGCTTGA 39 515 1250 Antisense
AGCTTGAAATTCCTTACTTGCGTGC 360 77 1268 Antisense
TTCCTTACTTGCGTGCCACGGTTGA 662 695 1277 Antisense
TGCCACGGTTGATGCGTTTCCGAAA 666 583 1290 Antisense
GCGTTTCCGAAACGTGTGCGGGTCT 166 285 1303 Antisense
GAAACGTGTGCGGGTCTGTATCGAG 633 357 1311 Antisense
GGGTCTGTATCGAGGCGGATGGAGA 547 495 1322 Antisense
GAGGCGGATGGAGATATCTTTGAAT 144 407 1333 Antisense
Sequence Source Affymetrix Proprietary Database