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[188943_s_at]

Description Y63D3A.6A /REP_DB=WormBase Gene ID /WP=CE20337 /TR=Q9U1W0 /GB=CAB63399.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=DnaJ domain
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 06      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 21      6grp_total > 14      4grp_total > 59      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1610
1 2 3 4 range
A 1408.7
(0.7)
P 		1777.6
(2.8)
P 		1808.8
(3)
P 		755.4
(-3)
P 		1053
B 1607.4
(0.6)
P 		1880.4
(1.6)
P 		2251.9
(3)
P 		668.5
(-3)
P 		1583
C 1490.2
(0.8)
P 		1529.1
(1)
P 		1970.3
(3)
P 		642.2
(-3)
P 		1328
avr 1502.1
(0.7) 		1729
(1.7) 		2010.3
(3) 		688.7
(-3) 		1322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 938
1 2 3 4 5 6 range
A 1276.4
(0.9)
P 		1564.2
(3)
P 		750.3
(-3)
P 		1332.5
(1.3)
P 		912.2
(-1.8)
P 		1172.1
(0.1)
P 		814
B 1391.4
(3)
P 		1057.3
(-0)
P 		1032
(-0.3)
P 		1041.2
(-0.2)
P 		843.3
(-2)
P 		728.9
(-3)
P 		663
C 1666.7
(3)
P 		1120.2
(-1)
P 		1593.2
(2.5)
P 		1023.8
(-1.7)
P 		1126.2
(-0.9)
P 		843.7
(-3)
P 		823
avr 1444.8
(3) 		1247.2
(0.8) 		1125.2
(-0.6) 		1132.5
(-0.5) 		960.6
(-2.5) 		914.9
(-3) 		530
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 512.9
(3)
P 		385.9
(1.1)
P 		472.9
(2.4)
P 		110.6
(-3)
P 		402
B 512.6
(2.9)
P 		464.4
(2.1)
P 		521.8
(3)
P 		142.5
(-3)
P 		379
C 493.3
(1)
P 		439.6
(0.4)
P 		686.7
(3)
P 		108.3
(-3)
P 		578
avr 506.3
(2.3) 		430
(1.2) 		560.5
(3) 		120.5
(-3) 		440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 235.3
(-1.9)
P 		556.3
(3)
P 		163.4
(-3)
P 		338
(-0.3)
P 		275.3
(-1.3)
P 		285.4
(-1.1)
P 		393
B 484.2
(3)
P 		351.9
(-0.4)
P 		250.6
(-3)
P 		275.8
(-2.4)
P 		342.6
(-0.6)
P 		271.8
(-2.5)
P 		234
C 617.8
(3)
P 		341.8
(-1)
P 		405.5
(-0.1)
P 		205.9
(-3)
P 		364.4
(-0.7)
P 		282.4
(-1.9)
P 		412
avr 445.8
(3) 		416.7
(2) 		273.2
(-3) 		273.2
(-3) 		327.4
(-1.1) 		279.9
(-2.8) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188943_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2343
Sequence Type Exemplar sequence
Representative Public ID Y63D3A.6A NCBI
Target Description Y63D3A.6A /REP_DB=WormBase Gene ID /WP=CE20337 /TR=Q9U1W0 /GB=CAB63399.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=DnaJ domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061062(11), NM_061063(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061062 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-29) (dnj-29) mRNA, complete cds. 11/11 A 
NM_061063 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-29) (dnj-29) mRNA, complete cds. 11/11 None
SNAP00000002949 ENSEMBL cdna:SNAP chromosome:CEL140:I:14112912:14121178:-1 11/11 None
GENEFINDER00000002956 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14112912:14118424:-1 11/11 None
Y63D3A.6b ENSEMBL cdna:known chromosome:CEL140:I:14112547:14121209:-1 gene:Y63D3A.6 11/11 A 
Y63D3A.6a.1 ENSEMBL cdna:known chromosome:CEL140:I:14115887:14121226:-1 gene:Y63D3A.6 11/11 None
Y63D3A.6a.2 ENSEMBL cdna:known chromosome:CEL140:I:14115932:14121297:-1 gene:Y63D3A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14115862-14121140(-) 96.21 100.0
Public Domain and Genome References
Ensembl Y63D3A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21710 Hypothetical protein Y63D3A.6b [Caenorhabditis elegans] ref|NP_493463.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-29) [Caenorhabditis elegans] 0.0
blast CAE71813 Hypothetical protein CBG18828 [Caenorhabditis briggsae] 0.0
blast CAB63399 Hypothetical protein Y63D3A.6a [Caenorhabditis elegans] ref|NP_493464.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-29) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.99999996755032E-17
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 6.00000006808708E-18
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.3E-22
Pfam IPR004179 EMBL-EBI Sec63 domain 9.0E-126
Pfam IPR004179 EMBL-EBI Sec63 domain 2.6E-24
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 1.3E-22
Pfam IPR004179 EMBL-EBI Sec63 domain 9.0E-126
Pfam IPR004179 EMBL-EBI Sec63 domain 2.6E-24
Pfam IPR004179 EMBL-EBI Sec63 domain 2.6E-108
Pfam IPR004179 EMBL-EBI Sec63 domain 2.5E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493463.1 3 13-35,76-93,194-216
NP_493464.1 3 13-35,76-93,194-216
Y63D3A.6b 3 13-35,76-93,194-216
Y63D3A.6a.1 3 13-35,76-93,194-216
Y63D3A.6a.2 3 13-35,76-93,194-216
SNAP00000002949 3 7-29,66-83,184-206
Sequence
Target Sequence 
>C. ELEGANS:188943_S_AT
tgttcgttcaggcgctttggcaaaagaatagcccgttgcttcagcttccacacattacag
actacaatttacagcatttgagaaagaagcgtgtattctcgtgccatgacctagctgtaa
tggatgcagaaacccgtcgttccgtccttcgatccctatcaaatgaggaatatcgtgacg
taatggtcgttttatcaatgatgccacgtctacaaatcgagacgaagacagttgtagaag
gagaagatgataagcatgaactgacggctggatgtgtagttacactgaaagttacgatga
gaagaagccgattaattgatccacaagaagcagggctcgctgatcagtacaaaaagtatg
cggaagatggtggagatgatgagttggaagcatcggaagctccagaagaagctgctgcta
ctgttgaggaggaagaagtgaagaaacggaagccgtgggagaagaataagccgaaacaga
agaaaaagaaggctcaaggtcagggccagaagaagtttgtgaagaagaacgccccggctt
cacctgacacggagaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCGTTCAGGCGCTTTGGCAAAA 605 561 1127 Antisense
AAAGAATAGCCCGTTGCTTCAGCTT 39 123 1149 Antisense
CTTCAGCTTCCACACATTACAGACT 146 221 1165 Antisense
AAGAAGCGTGTATTCTCGTGCCATG 255 153 1210 Antisense
TCTCGTGCCATGACCTAGCTGTAAT 552 609 1223 Antisense
AATGGATGCAGAAACCCGTCGTTCC 651 161 1245 Antisense
CGTCCTTCGATCCCTATCAAATGAG 694 245 1269 Antisense
TTATCAATGATGCCACGTCTACAAA 37 679 1318 Antisense
AGAAGCAGGGCTCGCTGATCAGTAC 400 73 1452 Antisense
GAAGCTGCTGCTACTGTTGAGGAGG 648 341 1534 Antisense
CCGGCTTCACCTGACACGGAGAAGG 614 261 1660 Antisense
Sequence Source Affymetrix Proprietary Database