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[188938_at]

Description F01F1.7 /REP_DB=WormBase Gene ID /WP=CE24878 /CHR=3 /FEA=Sanger Annotation /DEF=RNA helicase (ST.LOUIS) TR:Q19085 protein_id:AAC46641.1
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 58      4grp_high_8_8 > 07      6grp_highest_nonorm > 82      6grp_total > 48      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 209.9
(-2.4)
P 		273.5
(0)
A 		194.6
(-3)
P 		352.4
(3)
P 		158
B 142.4
(-3)
P 		255.8
(-0.1)
P 		277.2
(0.5)
P 		373.2
(3)
P 		231
C 376.9
(2.3)
P 		146.8
(-3)
P 		405
(3)
P 		346
(1.6)
P 		258
avr 243.1
(-2.2) 		225.4
(-3) 		292.3
(0) 		357.2
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 367.4
(2.1)
P 		379.6
(2.4)
P 		180.6
(-3)
P 		361.4
(1.9)
P 		301.7
(0.3)
P 		402.1
(3)
P 		222
B 284.1
(-0.6)
P 		347.9
(2.1)
P 		226
(-3)
P 		256
(-1.7)
P 		300.3
(0.1)
P 		368.5
(3)
P 		143
C 384.5
(1)
P 		347.2
(0.3)
P 		270.9
(-1.2)
P 		213.7
(-2.3)
P 		180.8
(-3)
P 		482.9
(3)
P 		302
avr 345.3
(0.7) 		358.2
(1.1) 		225.8
(-3) 		277
(-1.4) 		260.9
(-1.9) 		417.8
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 76.4
(3)
P 		59.4
(-1)
A 		50.9
(-3)
P 		51.6
(-2.8)
P 		26
B 45.4
(-3)
P 		63.2
(0.1)
P 		64.2
(0.3)
P 		79.5
(3)
P 		34
C 124.8
(2)
P 		42.2
(-3)
P 		141.2
(3)
P 		58.3
(-2)
P 		99
avr 82.2
(2.4) 		54.9
(-3) 		85.4
(3) 		63.1
(-1.4) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 67.7
(-1.2)
P 		135
(3)
P 		39.3
(-3)
P 		91.7
(0.3)
P 		91
(0.2)
P 		97.9
(0.7)
P 		96
B 98.9
(0.2)
P 		115.8
(1.4)
P 		54.9
(-3)
P 		67.8
(-2.1)
P 		122
(1.9)
P 		137.4
(3)
P 		83
C 142.5
(2)
P 		105.9
(0.2)
P 		68.9
(-1.7)
P 		43
(-3)
P 		58.5
(-2.2)
P 		161.7
(3)
P 		119
avr 103
(0.7) 		118.9
(2) 		54.4
(-3) 		67.5
(-2) 		90.5
(-0.2) 		132.3
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7396
Sequence Type Exemplar sequence
Representative Public ID F01F1.7 NCBI
Target Description F01F1.7 /REP_DB=WormBase Gene ID /WP=CE24878 /CHR=3 /FEA=Sanger Annotation /DEF=RNA helicase (ST.LOUIS) TR:Q19085 protein_id:AAC46641.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000009944 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5845432:5853213:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065859 7/11 Cross Hyb Matching Probes None
SNAP00000009917 7/11 Cross Hyb Matching Probes None
F01F1.7 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5847227-5853212(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67224 Hypothetical protein F01F1.7 [Caenorhabditis elegans] ref|NP_498260.2| F01F1.7 [Caenorhabditis elegans] 0.0
blast T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans 0.0
blast CAE64386 Hypothetical protein CBG09074 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Valyl-tRNA synthetase (ValRS) C-terminal domain All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Valyl-tRNA synthetase (ValRS) C-terminal domain 0.389999985694885
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 1.3E-33
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 1.7E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009944 1 733-750
Sequence
Target Sequence 
>C. ELEGANS:188938_AT
gtgctcgaatcacaattccaaccaccgattattatttttgtcaatcagaagaaaggtgct
gatatgctctcaaaaggtcttaccaaacttggtttcaagccaacagttcttcacggagga
aaaggtcaagatcaaagagaatacgctctgcaggctcttaaagaaggaacgagtgatatt
cttgtggctactgatgttgctggaagaggtatcgacgtcaaagatgtatcactggtactc
aactacgatatggcaaaatcaattgaagactatactcacagaattggtagaactggtcga
gctggtaaacatggaaaagcaatcacattcctcacacctgacgatactgccgtctatttc
gacttgaagcaggttctggtcgaatcgccagtgtcatcatgcccacctgaacttgcgaat
catccggatgcacagaggatcgacgtcaaagatgtatcactggtactcaactacgatatg
gcaaaaccaatcgaagactatactcacagaatttatataactggtatgtctttatttact
ttttctgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTCGAATCACAATTCCAACCAC 684 479 1711 Antisense
TTCCAACCACCGATTATTATTTTTG 371 699 1726 Antisense
GAAGAAAGGTGCTGATATGCTCTCA 133 341 1758 Antisense
GATATGCTCTCAAAAGGTCTTACCA 261 425 1771 Antisense
TCAAGCCAACAGTTCTTCACGGAGG 699 631 1805 Antisense
AATACGCTCTGCAGGCTCTTAAAGA 24 173 1850 Antisense
GAGTGATATTCTTGTGGCTACTGAT 506 401 1881 Antisense
TCCGGATGCACAGAGGATCGACGTC 353 593 2133 Antisense
GGATCGACGTCAAAGATGTATCACT 206 513 2147 Antisense
AAAACCAATCGAAGACTATACTCAC 444 131 2193 Antisense
ATGTCTTTATTTACTTTTTCTGTGG 192 49 2236 Antisense
Sequence Source Affymetrix Proprietary Database