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[188935_at]

Description Y49F6A.4 /REP_DB=WormBase Gene ID /WP=CE22243 /TR=Q9N3L8 /GB=AAF60722.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 45      4grp_total > 43      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.5
(0.4)
A 		7.9
(3)
A 		7.4
(2.1)
A 		4.7
(-3)
A 		3
B 7.6
(-2.3)
A 		17.1
(3)
A 		7.7
(-2.3)
A 		6.4
(-3)
A 		11
C 6
(-1.9)
A 		11.6
(3)
A 		4.7
(-3)
A 		6
(-1.9)
A 		7
avr 6.7
(-2.1) 		12.2
(3) 		6.6
(-2.2) 		5.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.4
(0.2)
A 		5.1
(-1.6)
A 		11
(3)
A 		3.3
(-3)
A 		4.1
(-2.4)
A 		6
(-0.9)
A 		8
B 5
(-2.5)
A 		11.6
(2.3)
A 		4.3
(-3)
A 		5.4
(-2.2)
A 		11.7
(2.4)
A 		12.5
(3)
A 		8
C 6.8
(2)
A 		6.7
(1.8)
A 		7.7
(3)
A 		4.6
(-0.6)
A 		2.5
(-3)
A 		3.9
(-1.4)
A 		5
avr 6.4
(0.5) 		7.8
(3) 		7.7
(2.8) 		4.4
(-3) 		6.1
(-0) 		7.5
(2.5) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.4
(3)
A 		1.7
(0.5)
A 		1.9
(1.2)
A 		0.7
(-3)
A 		2
B 2.4
(-0.9)
A 		4.2
(3)
A 		1.8
(-2.1)
A 		1.4
(-3)
A 		3
C 2
(-0.4)
A 		3.3
(3)
A 		1.6
(-1.4)
A 		1
(-3)
A 		2
avr 2.3
(0.7) 		3.1
(3) 		1.8
(-0.7) 		1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.4
(-0.8)
A 		1.8
(0.8)
A 		2.4
(3)
A 		0.8
(-3)
A 		1.2
(-1.5)
A 		1.5
(-0.4)
A 		2
B 1.8
(-1.9)
A 		3.9
(1.5)
A 		1.1
(-3)
A 		1.4
(-2.5)
A 		4.8
(3)
A 		4.7
(2.8)
A 		4
C 2.5
(3)
A 		2
(1.2)
A 		2
(1.2)
A 		0.9
(-2.6)
A 		0.8
(-3)
A 		1.3
(-1.2)
A 		2
avr 1.9
(0.4) 		2.6
(3) 		1.8
(0) 		1
(-3) 		2.3
(1.9) 		2.5
(2.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4574
Sequence Type Exemplar sequence
Representative Public ID Y49F6A.4 NCBI
Target Description Y49F6A.4 /REP_DB=WormBase Gene ID /WP=CE22243 /TR=Q9N3L8 /GB=AAF60722.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y49F6A.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y49F6A.4 Y49F6A.4 /REP_DB=WormBase Gene ID /WP=CE22243 /TR=Q9N3L8 /GB=AAF60722.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transposase A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032333 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032337 2/11 Cross Hyb Matching Probes None
GENEFINDER00000032339 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:188935_AT
aatggtcaacaccccaagtattcttattggcacacctcataaaaatagtgcgcattttta
gatcgattggaaaaatgtcgcgtttacagatgtttaaggatgtcgtagagattaaagtaa
tttccaagatgacccatagcattgccgactttcccaatcaatatttggagcagccccccg
ccgagccaaccgatgaggacaacccggcaccttggctgaaaatggtgggtcaggagaagg
cctcatctgaggcagtcacagaggaggaggtaatctttgcgaataagtgtgactgctcga
ttccagaaaacatgaagcttgagcacctctccaagcagattgccatctggaaacggcttg
agaagttcgccagagagaatcaccgcttcctgactctgagcctatatcgggaaaagcagg
ctcaacggagatcaccatttgtcgggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTCAACACCCCAAGTATTCTT 212 163 950 Antisense
AAGTATTCTTATTGGCACACCTCAT 520 157 965 Antisense
AGATGACCCATAGCATTGCCGACTT 662 67 1076 Antisense
TTGCCGACTTTCCCAATCAATATTT 667 699 1091 Antisense
GCCGAGCCAACCGATGAGGACAACC 464 283 1129 Antisense
ACCCGGCACCTTGGCTGAAAATGGT 651 89 1151 Antisense
GTGGGTCAGGAGAAGGCCTCATCTG 417 489 1174 Antisense
GTGTGACTGCTCGATTCCAGAAAAC 105 489 1236 Antisense
ACCTCTCCAAGCAGATTGCCATCTG 655 87 1274 Antisense
CTTCCTGACTCTGAGCCTATATCGG 454 219 1335 Antisense
AACGGAGATCACCATTTGTCGGGCT 532 143 1373 Antisense
Sequence Source Affymetrix Proprietary Database