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[188934_at] transferase

Description H23N18.1 /REP_DB=WormBase Gene ID /WP=CE20983 /TR=Q9TXZ6 /GB=AAD14730.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster 6grp_high1_10_10 > 38      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_total > 38      4grp_total > 32      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1304
1 2 3 4 range
A 312
(-3)
P 		1105.2
(2.4)
P 		1182.9
(2.9)
P 		1194.4
(3)
P 		882
B 379.8
(-3)
P 		1212
(1.5)
P 		1493.7
(3)
P 		1307
(2)
P 		1114
C 454.4
(-3)
P 		1123.6
(0.5)
P 		1615.9
(3)
P 		1117.6
(0.4)
P 		1162
avr 382.1
(-3) 		1146.9
(1.4) 		1430.8
(3) 		1206.3
(1.7) 		1049

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 482.7
(3)
P 		149.7
(-1.9)
P 		88.9
(-2.8)
P 		77.8
(-3)
P 		99.1
(-2.7)
P 		265.2
(-0.2)
P 		405
B 494.4
(3)
P 		129.3
(-2.2)
P 		106.8
(-2.5)
P 		102
(-2.6)
P 		75.3
(-3)
P 		314.3
(0.4)
P 		419
C 495.9
(3)
P 		130.2
(-2.1)
P 		107.3
(-2.5)
P 		69.4
(-3)
A 		74.2
(-2.9)
P 		403.2
(1.7)
P 		427
avr 491
(3) 		136.4
(-2.2) 		101
(-2.7) 		83.1
(-3) 		82.9
(-3) 		327.6
(0.6) 		408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 113.6
(-3)
P 		239.9
(0.9)
P 		309.2
(3)
P 		174.8
(-1.1)
P 		196
B 121.1
(-3)
P 		299.3
(1.8)
P 		346.1
(3)
P 		278.5
(1.2)
P 		225
C 150.4
(-3)
P 		323
(-0.5)
P 		563.2
(3)
P 		188.5
(-2.4)
P 		413
avr 128.4
(-3) 		287.4
(0.4) 		406.2
(3) 		213.9
(-1.2) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 89
(3)
P 		53.2
(-0.1)
P 		19.4
(-3)
P 		19.7
(-3)
P 		29.9
(-2.1)
P 		64.6
(0.9)
P 		70
B 172
(3)
P 		43
(-2.3)
P 		25.9
(-3)
P 		27
(-3)
P 		30.6
(-2.8)
P 		117.2
(0.7)
P 		146
C 183.8
(3)
P 		39.7
(-2.1)
P 		27.3
(-2.5)
P 		14
(-3)
A 		24
(-2.6)
P 		135
(1.3)
P 		170
avr 148.3
(3) 		45.3
(-1.8) 		24.2
(-2.8) 		20.2
(-3) 		28.2
(-2.6) 		105.6
(1) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188934_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14788
Sequence Type Exemplar sequence
Representative Public ID H23N18.1 NCBI
Target Description H23N18.1 /REP_DB=WormBase Gene ID /WP=CE20983 /TR=Q9TXZ6 /GB=AAD14730.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071916 NCBI Caenorhabditis elegans H23N18.1 (transferase) mRNA, complete cds. 11/11 None
SNAP00000039203 ENSEMBL cdna:SNAP chromosome:CEL140:V:4908701:4911193:1 11/11 None
GENEFINDER00000039211 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4908701:4911193:1 11/11 None
H23N18.1 ENSEMBL cdna:known chromosome:CEL140:V:4908701:4911193:1 gene:H23N18.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4908700-4911193(+) 100.0 100.0
Public Domain and Genome References
Gene Title transferase
Gene Symbol ugt-13
Ensembl H23N18.1
Entrez Gene 186766 Entrez gene
SwissProt Q9TXZ6 EMBL-EBI
WormBase CE35331 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636165_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14730 Udp-glucuronosyltransferase protein 13 [Caenorhabditis elegans] ref|NP_504317.2| H23N18.1 [Caenorhabditis elegans] 0.0
blast CAE64227 Hypothetical protein CBG08860 [Caenorhabditis briggsae] 0.0
blast AAD14732 Udp-glucuronosyltransferase protein 8 [Caenorhabditis elegans] ref|NP_504315.1| H23N18.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.8E-16
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.8E-16
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.8E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504317.2 1 498-520
H23N18.1 1 498-520
SNAP00000039203 2 5-27,483-505
GENEFINDER00000039211 1 506-528
Sequence
Target Sequence 
>C. ELEGANS:188934_AT
aagcttttcgttacacatggaggtttgggaagtacaactgaagtggcctatactggaaaa
cctgcactaatggttccaatatttggagatcagccgaataacgcggatatgcttgcaagg
cacggcggagctattgcctatagtaaatttgatctggcgaatggggaaaagcttgctaat
acagtgaaagatatggtttttaatccaaaatacaaggaaaaagctgagctattattcgac
gtactctcaaatcagccaatcgatccaaaggaaaatttcatcaagcacctggagtttgcc
atgaaattcccaaatcaccgatcacaagttcctgcagtgaaccaagctggtctgattgcg
cag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTTTTCGTTACACATGGAGGTT 334 151 1153 Antisense
TGGCCTATACTGGAAAACCTGCACT 677 543 1196 Antisense
GCCGAATAACGCGGATATGCTTGCA 557 285 1245 Antisense
TATGCTTGCAAGGCACGGCGGAGCT 199 651 1260 Antisense
CACGGCGGAGCTATTGCCTATAGTA 508 197 1273 Antisense
AAGCTGAGCTATTATTCGACGTACT 258 149 1373 Antisense
GTACTCTCAAATCAGCCAATCGATC 394 459 1393 Antisense
CATCAAGCACCTGGAGTTTGCCATG 312 213 1431 Antisense
TTGCCATGAAATTCCCAAATCACCG 34 703 1448 Antisense
AAATCACCGATCACAAGTTCCTGCA 184 117 1464 Antisense
GAACCAAGCTGGTCTGATTGCGCAG 616 345 1491 Antisense
Sequence Source Affymetrix Proprietary Database