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[188933_at]

Description T04A11.7 /REP_DB=WormBase Gene ID /WP=CE13132 /TR=O18018 /GB=CAB05610.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 75      4grp_total > 02      6grp_cgc > 57      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 5.9
(-2.8)
A 		1.9
(-3)
A 		12
(-2.5)
A 		120.9
(3)
A 		119
B 11.1
(-2.5)
A 		2.2
(-3)
A 		5.2
(-2.8)
A 		118.8
(3)
P 		117
C 5.3
(-3)
A 		7
(-2.9)
A 		5.6
(-3)
A 		124.7
(3)
P 		119
avr 7.4
(-2.8) 		3.7
(-3) 		7.6
(-2.8) 		121.5
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 9.6
(-1.5)
A 		1.6
(-3)
A 		30.5
(2.5)
A 		33.4
(3)
A 		4
(-2.5)
A 		4.8
(-2.4)
A 		32
B 16.5
(-1.7)
A 		5.8
(-3)
A 		21.3
(-1.1)
A 		9.6
(-2.5)
A 		13.2
(-2.1)
A 		55.6
(3)
A 		50
C 1.7
(-3)
A 		38.3
(3)
A 		8.3
(-1.9)
A 		11.6
(-1.4)
A 		29.4
(1.5)
A 		29.4
(1.5)
A 		37
avr 9.3
(-3) 		15.2
(-1.3) 		20
(0.1) 		18.2
(-0.4) 		15.5
(-1.2) 		29.9
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.2
(-2.4)
A 		0.4
(-3)
A 		3.1
(-2.1)
A 		17.7
(3)
A 		17
B 3.5
(-2.3)
A 		0.5
(-3)
A 		1.2
(-2.8)
A 		25.3
(3)
P 		25
C 1.8
(-3)
A 		2
(-2.9)
A 		1.9
(-3)
A 		21
(3)
P 		19
avr 2.5
(-2.6) 		1
(-3) 		2.1
(-2.7) 		21.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.8
(-2.1)
A 		0.6
(-3)
A 		6.6
(1.6)
A 		8.5
(3)
A 		1.2
(-2.5)
A 		1.2
(-2.5)
A 		8
B 5.7
(-1.8)
A 		1.9
(-3)
A 		5.2
(-1.9)
A 		2.5
(-2.8)
A 		5.4
(-1.9)
A 		20.7
(3)
A 		19
C 0.6
(-3)
A 		11.7
(3)
A 		2.1
(-2.2)
A 		2.3
(-2.1)
A 		9.5
(1.8)
A 		9.9
(2)
A 		11
avr 2.7
(-3) 		4.7
(-1.5) 		4.6
(-1.6) 		4.4
(-1.7) 		5.4
(-0.9) 		10.6
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8619
Sequence Type Exemplar sequence
Representative Public ID T04A11.7 NCBI
Target Description T04A11.7 /REP_DB=WormBase Gene ID /WP=CE13132 /TR=O18018 /GB=CAB05610.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028184(11), NM_001028183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028184 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-20) (sru-20) mRNA, complete cds. 11/11 None
NM_001028183 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-20) (sru-20) mRNA, complete cds. 11/11 None
GENEFINDER00000015177 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12496017:12497815:1 11/11 None
T04A11.7 ENSEMBL cdna:known chromosome:CEL140:IV:12496036:12497815:1 gene:T04A11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015162 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12496022-12497821(+) 100.0 100.0
Public Domain and Genome References
Ensembl T04A11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05610 Hypothetical protein T04A11.7a [Caenorhabditis elegans] ref|NP_001023354.1| Serpentine Receptor, class U family member (sru-20) [Caenorhabditis elegans] 1.0E-169
blast CAI70411 Hypothetical protein T04A11.7b [Caenorhabditis elegans] ref|NP_001023355.1| Serpentine Receptor, class U family member (sru-20) [Caenorhabditis elegans] 1.0E-165
blast CAB05610 Hypothetical protein T04A11.7a [Caenorhabditis elegans] ref|NP_001023354.1| Serpentine Receptor, class U family member (sru-20) [Caenorhabditis elegans] 1.0E-163
blast CAI70411 Hypothetical protein T04A11.7b [Caenorhabditis elegans] ref|NP_001023355.1| Serpentine Receptor, class U family member (sru-20) [Caenorhabditis elegans] 1.0E-163
blast CAB05612 Hypothetical protein T04A11.9 [Caenorhabditis elegans] ref|NP_502393.2| Serpentine Receptor, class U family member (sru-18) [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.4E-92
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.4E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023355.1 6 29-51,71-93,113-135,156-178,208-230,261-283
NP_001023354.1 6 29-51,71-93,113-135,156-178,208-230,267-289
T04A11.7 6 29-51,71-93,113-135,156-178,208-230,267-289
GENEFINDER00000015177 7 13-35,65-87,107-129,149-171,192-214,244-266,297-319
Sequence
Target Sequence 
>C. ELEGANS:188933_AT
tcgcctatactttaatgatctacccggttttgttgattgtagtacgaataaccccgattc
agtatccacaaagtcatcgagagatcaactcgaaaatacttgcctatagtattccattca
ttcacatctaccctatattcttcatactccacatgataccagctttaggggtctgccgac
aattatggaaaccatatccatttggttgtgcttttatacacttttatgggtcttggcacg
atctcaaaaactctccatttgaagtgataaattctgttttgtggcttataatatttctaa
tttgtaacttcaagctttatcagaaaattcagaacttgaaagggacttctcgtggcaact
ccaacgtgaatcaaagttcaagatatcgcagagctgagatctcactgacactgacttcag
gttcaatgatcctaacatatattggaacttttataattaatttcactctgatgacatata
gttcgttcttccgtccatatggatatgatctcgagacatgtgtagttccatggatgctct
atttaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCTATACTTTAATGATCTACCC 365 597 491 Antisense
GATCTACCCGGTTTTGTTGATTGTA 602 419 507 Antisense
AATAACCCCGATTCAGTATCCACAA 451 171 537 Antisense
CATCTACCCTATATTCTTCATACTC 170 213 615 Antisense
ATACTCCACATGATACCAGCTTTAG 52 25 634 Antisense
ATACCAGCTTTAGGGGTCTGCCGAC 239 21 646 Antisense
GGGTCTTGGCACGATCTCAAAAACT 528 495 718 Antisense
TGAAAGGGACTTCTCGTGGCAACTC 421 567 827 Antisense
TGAGATCTCACTGACACTGACTTCA 642 567 885 Antisense
CTGATGACATATAGTTCGTTCTTCC 426 239 958 Antisense
GTTCCATGGATGCTCTATTTAACTC 413 441 1015 Antisense
Sequence Source Affymetrix Proprietary Database